Sequence-Based Predictions Hemochromatosis
From Bioinformatikpedia
Hemochromatosis>>Task 3: Sequence-based predictions
Qc terxepssrw evi jypp sj aiewipw. Mrjsvq xli Uyiir, ws xlex wli qmklx wlss xliq eaec. Livi ai ks 'vsyrh xli qypfivvc fywl. Ks qsroic KS!
Aqw vjkpm K co etcba, dwv vjga ycpv aqw vq vjkpm vjcv. K mpqy ugetgvu. Mggr vjg rcpvcnqqpu. Cnycau mggr vjg rcpvcnqqpu.
Don't google it... but a hint: Caesar would solve it ;)
Contents
Short Task Description
Detailed description: Sequence-Based Predictions
Protocol
Secondary Structure
Disorder
Transmembrane Helices
<figtable id="tmh_3pbl">
| P35462 (3PBL) | TMH 1 | TMH 2 | TMH 3 | TMH 4 | TMH 5 | TMH 6 | TMH 7 |
|---|---|---|---|---|---|---|---|
| PolyPhobius | 30-55 | 66-88 | 105-126 | 150-170 | 188-212 | 329-352 | 367-386 |
| UniProt | 33-55 | 66-88 | 105-126 | 150-170 | 188-212 | 330-351 | 367-388 |
| OPM | 34-52 | 67-91 | 101-126 | 150-170 | 187-209 | 330-351 | 363-386 |
| PDBTM | 35-52 | 68-84 | 109-123 | 152-166 | 191-206 | 334-347 | 368-382 |
</figtable>
Signal Peptides
<figtable id="signalp">
</figtable>
GO Terms
GOPET
<figtable id="gopet">
| GOid | Aspect | Confidence | Go term |
|---|---|---|---|
| GO:0004872 | F (Molecular Function Ontology) | 91% | receptor activity |
| GO:0030106 | F (Molecular Function Ontology) | 88% | MHC class I receptor activity |
</figtable>
ProtFun
<figtable id="protfun">
| Functional category | Probability | Odds |
|---|---|---|
| Biosynthesis of cofactors | 0.105 | 1.452 |
| Cell envelope* | 0.633* | 10.377* |
| Central intermediary metabolism | 0.231 | 3.663 |
| Purines and pyrimidines | 0.583 | 2.400 |
| Transport and binding | 0.732 | 1.785 |
| Enzyme/nonenzyme | ||
| Enzyme | 0.208 | 0.727 |
| Nonenzyme* | 0.792* | 1.110* |
| Enzyme class | ||
| Hydrolase | 0.135 | 0.425 |
| Gene Ontology category | ||
| Signal transducer | 0.201 | 0.939 |
| Receptor | 0.353 | 2.076 |
| Stress response | 0.274 | 3.108 |
| Immune response* | 0.381* | 4.486* |
</figtable>
