Difference between revisions of "Sequence-Based Predictions Hemochromatosis"
From Bioinformatikpedia
Bernhoferm (talk | contribs) (→Transmembrane Helices) |
Bernhoferm (talk | contribs) (→Disorder) |
||
| Line 21: | Line 21: | ||
== Disorder == |
== Disorder == |
||
| + | |||
| + | <figtable id="iupred"> |
||
| + | {| class="wikitable", style="float: right; border: 2px solid darkgray;", cellpadding="2" |
||
| + | ! scope="row" align="left" | |
||
| + | | align="right" | [[File:Hemo_dis_q30201.png|thumb|200px|left|Q30201]] |
||
| + | | align="right" | [[File:Hemo_dis_p10775.png|thumb|200px|left|P10775]] |
||
| + | |- |
||
| + | ! scope="row" align="left" | |
||
| + | | align="right" | [[File:Hemo_dis_q08209.png|thumb|200px|left|Q08209]] |
||
| + | | align="right" | [[File:Hemo_dis_q9x0e6.png|thumb|200px|left|Q9X0E6]] |
||
| + | |- |
||
| + | |+ style="caption-side: bottom; text-align: left"| <font size=1>'''TODO:''' description |
||
| + | |- |
||
| + | |} |
||
| + | </figtable> |
||
<br style="clear:both;"> |
<br style="clear:both;"> |
||
Revision as of 12:15, 18 May 2012
Hemochromatosis>>Task 3: Sequence-based predictions
Qc terxepssrw evi jypp sj aiewipw. Mrjsvq xli Uyiir, ws xlex wli qmklx wlss xliq eaec. Livi ai ks 'vsyrh xli qypfivvc fywl. Ks qsroic KS!
Aqw vjkpm K co etcba, dwv vjga ycpv aqw vq vjkpm vjcv. K mpqy ugetgvu. Mggr vjg rcpvcnqqpu. Cnycau mggr vjg rcpvcnqqpu.
Don't google it... but a hint: Caesar would solve it ;)
Contents
Short Task Description
Detailed description: Sequence-Based Predictions
Protocol
Secondary Structure
Disorder
<figtable id="iupred">
</figtable>
Transmembrane Helices
<figtable id="tmh_q30201">
| Q30201 | TMH 1 |
|---|---|
| PolyPhobius | 306-329 |
| UniProt | 307-330 |
| OPM | no entry |
| PDBTM | no entry |
</figtable>
<figtable id="tmh_p35462">
| P35462 (3PBL) | TMH 1 | TMH 2 | TMH 3 | TMH 4 | TMH 5 | TMH 6 | TMH 7 |
|---|---|---|---|---|---|---|---|
| PolyPhobius | 30-55 | 66-88 | 105-126 | 150-170 | 188-212 | 329-352 | 367-386 |
| UniProt | 33-55 | 66-88 | 105-126 | 150-170 | 188-212 | 330-351 | 367-388 |
| OPM | 34-52 | 67-91 | 101-126 | 150-170 | 187-209 | 330-351 | 363-386 |
| PDBTM | 35-52 | 68-84 | 109-123 | 152-166 | 191-206 | 334-347 | 368-382 |
</figtable>
<figtable id="tmh_p47863">
| P47863 (2D57) | TMH 1 | TMH 2 | TMH 3 | TMH 4 | TMH 5 | TMH 6 | TMH 7 | TMH 8 |
|---|---|---|---|---|---|---|---|---|
| PolyPhobius | 34-58 | 70-91 | 115-136 | 156-177 | 188-208 | 231-252 | ||
| UniProt | 37-57 | 65-85 | 116-136 | 156-176 | 185-205 | 232-252 | ||
| OPM | 34-56 | 70-88 | 98-107 | 112-136 | 156-178 | 189-203 | 214-223 | 231-252 |
| PDBTM | 39-55 | 72-89 | 95-106* | 116-133 | 158-177 | 188-205 | 209-222* | 231-248 |
</figtable>
<figtable id="tmh_q9ydf8">
| Q9YDF8 (1ORQ/1ORS) | TMH 1 | TMH 2 | TMH 3 | TMH 4 | TMH 5 | TMH 6 | TMH 7 | TMH 8 |
|---|---|---|---|---|---|---|---|---|
| PolyPhobius | 42-60 | 68-88 | 108-129 | 137-157 | 163-184 | 196-213 | 224-244 | |
| UniProt | 39-63 | 68-92 | 97-105* | 109-125 | 129-145 | 160-184 | 196-208* | 222-253 |
| OPM (1ORS) | 38-59 | 68-91 | 99-110 | 113-120 | 130-161 | |||
| OPM (1ORQ) | 166-185 | 196-208 | 220-238 | |||||
| PDBTM (1ORS) | 40-63 | 68-88 | 101-120 | 131-155 | ||||
| PDBTM (1ORQ) | 34-65 | 70-93 | 164-184 | 222-249 |
</figtable>
Signal Peptides
<figtable id="signalp">
</figtable>
GO Terms
GOPET
<figtable id="gopet">
| GOid | Aspect | Confidence | Go term |
|---|---|---|---|
| GO:0004872 | F (Molecular Function Ontology) | 91% | receptor activity |
| GO:0030106 | F (Molecular Function Ontology) | 88% | MHC class I receptor activity |
</figtable>
ProtFun
<figtable id="protfun">
| Functional category | Probability | Odds |
|---|---|---|
| Biosynthesis of cofactors | 0.105 | 1.452 |
| Cell envelope* | 0.633* | 10.377* |
| Central intermediary metabolism | 0.231 | 3.663 |
| Purines and pyrimidines | 0.583 | 2.400 |
| Transport and binding | 0.732 | 1.785 |
| Enzyme/nonenzyme | ||
| Enzyme | 0.208 | 0.727 |
| Nonenzyme* | 0.792* | 1.110* |
| Enzyme class | ||
| Hydrolase | 0.135 | 0.425 |
| Gene Ontology category | ||
| Signal transducer | 0.201 | 0.939 |
| Receptor | 0.353 | 2.076 |
| Stress response | 0.274 | 3.108 |
| Immune response* | 0.381* | 4.486* |
</figtable>
