Difference between revisions of "Sequence-Based Predictions Hemochromatosis"

From Bioinformatikpedia
(→‎Transmembrane Helices)
(→‎Transmembrane Helices)
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| style="border-style: solid; border-width: 0 0 0 0" |368-382
 
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|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': 3PBL
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|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description
 
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Revision as of 15:31, 17 May 2012

Hemochromatosis>>Task 3: Sequence-based predictions

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Short Task Description

Detailed description: Sequence-Based Predictions

Protocol

Protocol

Secondary Structure


Disorder


Transmembrane Helices

<figtable id="tmh_3pbl">

P35462 (3PBL) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7
PolyPhobius 30-55 66-88 105-126 150-170 188-212 329-352 367-386
UniProt 33-55 66-88 105-126 150-170 188-212 330-351 367-388
OPM 34-52 67-91 101-126 150-170 187-209 330-351 363-386
PDBTM 35-52 68-84 109-123 152-166 191-206 334-347 368-382
TODO: description

</figtable>


Signal Peptides

<figtable id="signalp">

Q30201
P47863
P11279
P02768
TODO: description

</figtable>


GO Terms


GOPET

<figtable id="gopet">

GOid Aspect Confidence Go term
GO:0004872 F (Molecular Function Ontology) 91% receptor activity
GO:0030106 F (Molecular Function Ontology) 88% MHC class I receptor activity
TODO: description

</figtable>


ProtFun

<figtable id="protfun">

Functional category Probability Odds
Biosynthesis of cofactors 0.105 1.452
Cell envelope* 0.633* 10.377*
Central intermediary metabolism 0.231 3.663
Purines and pyrimidines 0.583 2.400
Transport and binding 0.732 1.785
Enzyme/nonenzyme
Enzyme 0.208 0.727
Nonenzyme* 0.792* 1.110*
Enzyme class
Hydrolase 0.135 0.425
Gene Ontology category
Signal transducer 0.201 0.939
Receptor 0.353 2.076
Stress response 0.274 3.108
Immune response* 0.381* 4.486*
TODO: description

</figtable>




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