Difference between revisions of "Sequence-Based Predictions Hemochromatosis"
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== Transmembrane Helices == |
== Transmembrane Helices == |
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| + | <figtable id="tmh_3pbl"> |
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| + | {| class="wikitable", style="width:35%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000" |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH section |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |PolyPhobius |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |OPM |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |PDBTM |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |1 |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |329-352 |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |330-351 |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |367-386 |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |368-382 |
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| + | |+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': 3PBL |
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| + | |} |
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| + | </figtable> |
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Revision as of 15:16, 17 May 2012
Hemochromatosis>>Task 3: Sequence-based predictions
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Don't google it... but a hint: Caesar would solve it ;)
Contents
Short Task Description
Detailed description: Sequence-Based Predictions
Protocol
Secondary Structure
Disorder
Transmembrane Helices
<figtable id="tmh_3pbl">
| TMH section | PolyPhobius | OPM | PDBTM |
|---|---|---|---|
| 1 | 30-55 | 34-52 | 35-52 |
| 2 | 66-88 | 67-91 | 68-84 |
| 3 | 105-126 | 101-126 | 109-123 |
| 4 | 150-170 | 150-170 | 152-166 |
| 5 | 188-212 | 187-209 | 191-206 |
| 6 | 329-352 | 330-351 | 334-347 |
| 7 | 367-386 | 363-386 | 368-382 |
</figtable>
Signal Peptides
<figtable id="signalp">
</figtable>
GO Terms
GOPET
<figtable id="gopet">
| GOid | Aspect | Confidence | Go term |
|---|---|---|---|
| GO:0004872 | F (Molecular Function Ontology) | 91% | receptor activity |
| GO:0030106 | F (Molecular Function Ontology) | 88% | MHC class I receptor activity |
</figtable>
ProtFun
<figtable id="protfun">
| Functional category | Probability | Odds |
|---|---|---|
| Biosynthesis of cofactors | 0.105 | 1.452 |
| Cell envelope* | 0.633* | 10.377* |
| Central intermediary metabolism | 0.231 | 3.663 |
| Purines and pyrimidines | 0.583 | 2.400 |
| Transport and binding | 0.732 | 1.785 |
| Enzyme/nonenzyme | ||
| Enzyme | 0.208 | 0.727 |
| Nonenzyme* | 0.792* | 1.110* |
| Enzyme class | ||
| Hydrolase | 0.135 | 0.425 |
| Gene Ontology category | ||
| Signal transducer | 0.201 | 0.939 |
| Receptor | 0.353 | 2.076 |
| Stress response | 0.274 | 3.108 |
| Immune response* | 0.381* | 4.486* |
</figtable>
