Difference between revisions of "Sequence-Based Predictions Hemochromatosis"

From Bioinformatikpedia
(→‎Transmembrane Helices)
(→‎Transmembrane Helices)
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| style="border-style: solid; border-width: 0 0 0 0" |334-347
 
| style="border-style: solid; border-width: 0 0 0 0" |368-382
  
| style="border-style: solid; border-width: 0 0 0 0" |368-382
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|-
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|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description
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|}
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</figtable>
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<figtable id="tmh_2d57">
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{| class="wikitable", style="width:50%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000"
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |P47863 (2D57)
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 1
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 2
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 3
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 4
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 5
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 6
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 7
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! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 8
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| style="border-style: solid; border-width: 0 0 0 0" |PolyPhobius
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| style="border-style: solid; border-width: 0 0 0 0" |34-58
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| style="border-style: solid; border-width: 0 0 0 0" |70-91
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| style="border-style: solid; border-width: 0 0 0 0" |
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| style="border-style: solid; border-width: 0 0 0 0" |115-136
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| style="border-style: solid; border-width: 0 0 0 0" |156-177
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| style="border-style: solid; border-width: 0 0 0 0" |188-208
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| style="border-style: solid; border-width: 0 0 0 0" |
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| style="border-style: solid; border-width: 0 0 0 0" |231-252
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| style="border-style: solid; border-width: 0 0 0 0" |UniProt
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| style="border-style: solid; border-width: 0 0 0 0" |37-57
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| style="border-style: solid; border-width: 0 0 0 0" |65-85
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| style="border-style: solid; border-width: 0 0 0 0" |
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| style="border-style: solid; border-width: 0 0 0 0" |116-136
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| style="border-style: solid; border-width: 0 0 0 0" |156-176
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| style="border-style: solid; border-width: 0 0 0 0" |185-205
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| style="border-style: solid; border-width: 0 0 0 0" |
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| style="border-style: solid; border-width: 0 0 0 0" |232-252
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|-
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| style="border-style: solid; border-width: 0 0 0 0" |OPM
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| style="border-style: solid; border-width: 0 0 0 0" |34-56
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| style="border-style: solid; border-width: 0 0 0 0" |70-88
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| style="border-style: solid; border-width: 0 0 0 0" |98-107
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| style="border-style: solid; border-width: 0 0 0 0" |112-136
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| style="border-style: solid; border-width: 0 0 0 0" |156-178
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| style="border-style: solid; border-width: 0 0 0 0" |189-203
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| style="border-style: solid; border-width: 0 0 0 0" |214-223
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| style="border-style: solid; border-width: 0 0 0 0" |231-252
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| style="border-style: solid; border-width: 0 0 0 0" |PDBTM
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| style="border-style: solid; border-width: 0 0 0 0" |39-55
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| style="border-style: solid; border-width: 0 0 0 0" |72-89
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| style="border-style: solid; border-width: 0 0 0 0" |95-106*
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| style="border-style: solid; border-width: 0 0 0 0" |116-133
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| style="border-style: solid; border-width: 0 0 0 0" |158-177
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| style="border-style: solid; border-width: 0 0 0 0" |188-205
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| style="border-style: solid; border-width: 0 0 0 0" |209-222*
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| style="border-style: solid; border-width: 0 0 0 0" |231-248
 
|-
  
|-
 
|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description
  
|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description

Revision as of 10:40, 18 May 2012

Hemochromatosis>>Task 3: Sequence-based predictions

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Don't google it... but a hint: Caesar would solve it ;)


Short Task Description

Detailed description: Sequence-Based Predictions

Protocol

Protocol

Secondary Structure


Disorder


Transmembrane Helices

<figtable id="tmh_3pbl">

P35462 (3PBL) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7
PolyPhobius 30-55 66-88 105-126 150-170 188-212 329-352 367-386
UniProt 33-55 66-88 105-126 150-170 188-212 330-351 367-388
OPM 34-52 67-91 101-126 150-170 187-209 330-351 363-386
PDBTM 35-52 68-84 109-123 152-166 191-206 334-347 368-382
TODO: description

</figtable>

<figtable id="tmh_2d57">

P47863 (2D57) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7 TMH 8
PolyPhobius 34-58 70-91 115-136 156-177 188-208 231-252
UniProt 37-57 65-85 116-136 156-176 185-205 232-252
OPM 34-56 70-88 98-107 112-136 156-178 189-203 214-223 231-252
PDBTM 39-55 72-89 95-106* 116-133 158-177 188-205 209-222* 231-248
TODO: description

</figtable>


Signal Peptides

<figtable id="signalp">

Q30201
P47863
P11279
P02768
TODO: description

</figtable>


GO Terms


GOPET

<figtable id="gopet">

GOid Aspect Confidence Go term
GO:0004872 F (Molecular Function Ontology) 91% receptor activity
GO:0030106 F (Molecular Function Ontology) 88% MHC class I receptor activity
TODO: description

</figtable>


ProtFun

<figtable id="protfun">

Functional category Probability Odds
Biosynthesis of cofactors 0.105 1.452
Cell envelope* 0.633* 10.377*
Central intermediary metabolism 0.231 3.663
Purines and pyrimidines 0.583 2.400
Transport and binding 0.732 1.785
Enzyme/nonenzyme
Enzyme 0.208 0.727
Nonenzyme* 0.792* 1.110*
Enzyme class
Hydrolase 0.135 0.425
Gene Ontology category
Signal transducer 0.201 0.939
Receptor 0.353 2.076
Stress response 0.274 3.108
Immune response* 0.381* 4.486*
TODO: description

</figtable>




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