Difference between revisions of "Sequence-Based Predictions Hemochromatosis"

From Bioinformatikpedia
(→‎Transmembrane Helices)
(→‎Transmembrane Helices)
Line 77: Line 77:
 
|}
  
|}
 
</figtable>
  
</figtable>
  +
   
 
<figtable id="tmh_2d57">
  
<figtable id="tmh_2d57">
−
{| class="wikitable", style="width:50%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000"
 +
{| class="wikitable", style="width:55%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000"
 
|-
  
|-
 
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |P47863 (2D57)
  
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |P47863 (2D57)
Line 130: Line 131:
 
| style="border-style: solid; border-width: 0 0 0 0" |209-222*
  
| style="border-style: solid; border-width: 0 0 0 0" |209-222*
 
| style="border-style: solid; border-width: 0 0 0 0" |231-248
  
| style="border-style: solid; border-width: 0 0 0 0" |231-248
  +
|-
  +
|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description
  +
|}
  +
</figtable>
  +
  +
  +
<figtable id="tmh_1orq">
  +
{| class="wikitable", style="width:60%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000"
  +
|-
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Q9YDF8 (1ORQ/1ORS)
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 1
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 2
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 3
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 4
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 5
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 6
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 7
  +
! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |TMH 8
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |PolyPhobius
  +
| style="border-style: solid; border-width: 0 0 0 0" |42-60
  +
| style="border-style: solid; border-width: 0 0 0 0" |68-88
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |108-129
  +
| style="border-style: solid; border-width: 0 0 0 0" |137-157
  +
| style="border-style: solid; border-width: 0 0 0 0" |163-184
  +
| style="border-style: solid; border-width: 0 0 0 0" |196-213
  +
| style="border-style: solid; border-width: 0 0 0 0" |224-244
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |UniProt
  +
| style="border-style: solid; border-width: 0 0 0 0" |39-63
  +
| style="border-style: solid; border-width: 0 0 0 0" |68-92
  +
| style="border-style: solid; border-width: 0 0 0 0" |97-105*
  +
| style="border-style: solid; border-width: 0 0 0 0" |109-125
  +
| style="border-style: solid; border-width: 0 0 0 0" |129-145
  +
| style="border-style: solid; border-width: 0 0 0 0" |160-184
  +
| style="border-style: solid; border-width: 0 0 0 0" |196-208*
  +
| style="border-style: solid; border-width: 0 0 0 0" |222-253
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |OPM (1ORS)
  +
| style="border-style: solid; border-width: 0 0 0 0" |38-59
  +
| style="border-style: solid; border-width: 0 0 0 0" |68-91
  +
| style="border-style: solid; border-width: 0 0 0 0" |99-110
  +
| style="border-style: solid; border-width: 0 0 0 0" |113-120
  +
| style="border-style: solid; border-width: 0 0 0 0" |130-161
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |OPM (1ORQ)
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |166-185
  +
| style="border-style: solid; border-width: 0 0 0 0" |196-208
  +
| style="border-style: solid; border-width: 0 0 0 0" |220-238
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |PDBTM (1ORS)
  +
| style="border-style: solid; border-width: 0 0 0 0" |40-63
  +
| style="border-style: solid; border-width: 0 0 0 0" |68-88
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |101-120
  +
| style="border-style: solid; border-width: 0 0 0 0" |131-155
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
|-
  +
| style="border-style: solid; border-width: 0 0 0 0" |PDBTM (1ORQ)
  +
| style="border-style: solid; border-width: 0 0 0 0" |34-65
  +
| style="border-style: solid; border-width: 0 0 0 0" |70-93
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |164-184
  +
| style="border-style: solid; border-width: 0 0 0 0" |
  +
| style="border-style: solid; border-width: 0 0 0 0" |222-249
 
|-
  
|-
 
|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description
  
|+ style="caption-side: bottom; text-align: left" | <font size=1>'''TODO''': description

Revision as of 11:06, 18 May 2012

Hemochromatosis>>Task 3: Sequence-based predictions

Qc terxepssrw evi jypp sj aiewipw. Mrjsvq xli Uyiir, ws xlex wli qmklx wlss xliq eaec. Livi ai ks 'vsyrh xli qypfivvc fywl. Ks qsroic KS!

Aqw vjkpm K co etcba, dwv vjga ycpv aqw vq vjkpm vjcv. K mpqy ugetgvu. Mggr vjg rcpvcnqqpu. Cnycau mggr vjg rcpvcnqqpu.

Don't google it... but a hint: Caesar would solve it ;)


Short Task Description

Detailed description: Sequence-Based Predictions

Protocol

Protocol

Secondary Structure


Disorder


Transmembrane Helices

<figtable id="tmh_3pbl">

P35462 (3PBL) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7
PolyPhobius 30-55 66-88 105-126 150-170 188-212 329-352 367-386
UniProt 33-55 66-88 105-126 150-170 188-212 330-351 367-388
OPM 34-52 67-91 101-126 150-170 187-209 330-351 363-386
PDBTM 35-52 68-84 109-123 152-166 191-206 334-347 368-382
TODO: description

</figtable>


<figtable id="tmh_2d57">

P47863 (2D57) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7 TMH 8
PolyPhobius 34-58 70-91 115-136 156-177 188-208 231-252
UniProt 37-57 65-85 116-136 156-176 185-205 232-252
OPM 34-56 70-88 98-107 112-136 156-178 189-203 214-223 231-252
PDBTM 39-55 72-89 95-106* 116-133 158-177 188-205 209-222* 231-248
TODO: description

</figtable>


<figtable id="tmh_1orq">

Q9YDF8 (1ORQ/1ORS) TMH 1 TMH 2 TMH 3 TMH 4 TMH 5 TMH 6 TMH 7 TMH 8
PolyPhobius 42-60 68-88 108-129 137-157 163-184 196-213 224-244
UniProt 39-63 68-92 97-105* 109-125 129-145 160-184 196-208* 222-253
OPM (1ORS) 38-59 68-91 99-110 113-120 130-161
OPM (1ORQ) 166-185 196-208 220-238
PDBTM (1ORS) 40-63 68-88 101-120 131-155
PDBTM (1ORQ) 34-65 70-93 164-184 222-249
TODO: description

</figtable>


Signal Peptides

<figtable id="signalp">

Q30201
P47863
P11279
P02768
TODO: description

</figtable>


GO Terms


GOPET

<figtable id="gopet">

GOid Aspect Confidence Go term
GO:0004872 F (Molecular Function Ontology) 91% receptor activity
GO:0030106 F (Molecular Function Ontology) 88% MHC class I receptor activity
TODO: description

</figtable>


ProtFun

<figtable id="protfun">

Functional category Probability Odds
Biosynthesis of cofactors 0.105 1.452
Cell envelope* 0.633* 10.377*
Central intermediary metabolism 0.231 3.663
Purines and pyrimidines 0.583 2.400
Transport and binding 0.732 1.785
Enzyme/nonenzyme
Enzyme 0.208 0.727
Nonenzyme* 0.792* 1.110*
Enzyme class
Hydrolase 0.135 0.425
Gene Ontology category
Signal transducer 0.201 0.939
Receptor 0.353 2.076
Stress response 0.274 3.108
Immune response* 0.381* 4.486*
TODO: description

</figtable>




Retrieved from "https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php?title=Sequence-Based_Predictions_Hemochromatosis&oldid=19296"