Multiple Sequence Alignment: Muscle - set 1
From Bioinformatikpedia
The native protein is colored red in the Alignment. The violett marked sequnence regions show the short sequences, completely aligned in the contigous gap of a longer sequence.
MUSCLE (3.8) multiple sequence alignment tr|B7Z6S9|B7Z6S9_HUMAN MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCRLRWDFVLPPV tr|F5H241|F5H241_HUMAN ------------------------------------------------------------ P04062 ------------------------------------------------------------ pdb|pdb|3gxi_A ------------------------------------------------------------ pdb|pdb|2nt1_A ------------------------------------------------------------ tr|F6WDY8|F6WDY8_HORSE ------------------------------------------------------------ tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN ------------------------------------------------------------ tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN GAAVSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS tr|F5H241|F5H241_HUMAN -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS P04062 -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS pdb|pdb|3gxi_A ------------------------------------------------------------ pdb|pdb|2nt1_A ------------------------------------------------------------ tr|F6WDY8|F6WDY8_HORSE -------------------------MELSSPSREGCLKCPGRVGIMAASFMGLLLLQAVS tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN -------------------------MELSSPSREEYPMPRGRVGIMAASLMGLLLLHTVS tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI tr|F5H241|F5H241_HUMAN WAS--------------------------------------------------------- P04062 WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI pdb|pdb|3gxi_A ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI pdb|pdb|2nt1_A ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI tr|F6WDY8|F6WDY8_HORSE RASGARPCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPGTFSRYESTRSGRRMELSLGAI tr|D1L2S0|D1L2S0_BALPH -----------------VVCVCNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGAI sp|Q2KHZ8|GLCM_BOVIN WVSGARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI tr|A9UD35|A9UD35_DELDE ---------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI tr|F5CB27|F5CB27_DELCA ---------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI tr|B7Z6S9|B7Z6S9_HUMAN QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY tr|F5H241|F5H241_HUMAN --------------------------------------------------------GIGY P04062 QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY pdb|pdb|3gxi_A QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY pdb|pdb|2nt1_A QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY tr|F6WDY8|F6WDY8_HORSE QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY tr|D1L2S0|D1L2S0_BALPH QANRTGTGLLLTLQPD-------------------------------------------- sp|Q2KHZ8|GLCM_BOVIN QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY tr|A9UD35|A9UD35_DELDE QANRTGTGLLLTLQPDQKFQKVKG------------------------------------ tr|F5CB27|F5CB27_DELCA QANRTGTGLLLTLQPD-------------------------------------------- tr|B7Z6S9|B7Z6S9_HUMAN NIIRVPMASCDFSIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|F5H241|F5H241_HUMAN NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA P04062 NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA pdb|pdb|3gxi_A NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA pdb|pdb|2nt1_A NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|F6WDY8|F6WDY8_HORSE NIIRVPMASCDFSIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFA tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN NIIRVPMASCDFSIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFA tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP tr|F5H241|F5H241_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP P04062 SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP pdb|pdb|3gxi_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP pdb|pdb|2nt1_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP tr|F6WDY8|F6WDY8_HORSE SPWTSPTWLKTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENEP tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN SPWTSPTWLKTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENEP tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL tr|F5H241|F5H241_HUMAN SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL P04062 SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL pdb|pdb|3gxi_A SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL pdb|pdb|2nt1_A SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL tr|F6WDY8|F6WDY8_HORSE SAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNVRVLMLDDQRLLLPRWAQVVL tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN TAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDVRLLMLDDQRLLLPRWAQVVL tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|F5H241|F5H241_HUMAN TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS P04062 TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS pdb|pdb|3gxi_A TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS pdb|pdb|2nt1_A TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|F6WDY8|F6WDY8_HORSE ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPDMMLFASEACVGSKFWEQSVRLGS tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM tr|F5H241|F5H241_HUMAN WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM P04062 WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM pdb|pdb|3gxi_A WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM pdb|pdb|2nt1_A WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM tr|F6WDY8|F6WDY8_HORSE WDRGVQYSHSIITNLLYHVAGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN WDRGMRYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|F5H241|F5H241_HUMAN FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA P04062 FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA pdb|pdb|3gxi_A FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA pdb|pdb|2nt1_A FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|F6WDY8|F6WDY8_HORSE FYHLGHFSKFIPEGSQRVGLDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN FYHLGHFSKFIPEGSQRVGLVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPA tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN VGFLETISPGYSIHTYLWRRQ tr|F5H241|F5H241_HUMAN VGFLETISPGYSIHTYLWRRQ P04062 VGFLETISPGYSIHTYLWRRQ pdb|pdb|3gxi_A VGFLETISPGYSIHTYLWHRQ pdb|pdb|2nt1_A VGFLETISPGYSIHTYLWHRQ tr|F6WDY8|F6WDY8_HORSE VGFLETVSPGYSIHTYLWRRQ tr|D1L2S0|D1L2S0_BALPH --------------------- sp|Q2KHZ8|GLCM_BOVIN VGFMETVSPGYSIHTYLWRRQ tr|A9UD35|A9UD35_DELDE --------------------- tr|F5CB27|F5CB27_DELCA ---------------------
