Multiple Sequence Alignment: Muscle - set 1

From Bioinformatikpedia

The native protein is colored red in the Alignment. The violett marked sequnence regions show the short sequences, completely aligned in the contigous gap of a longer sequence.

MUSCLE (3.8) multiple sequence alignment


tr|B7Z6S9|B7Z6S9_HUMAN      MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCRLRWDFVLPPV
tr|F5H241|F5H241_HUMAN      ------------------------------------------------------------
P04062                      ------------------------------------------------------------
pdb|pdb|3gxi_A              ------------------------------------------------------------
pdb|pdb|2nt1_A              ------------------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE      ------------------------------------------------------------
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        ------------------------------------------------------------
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      GAAVSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS
tr|F5H241|F5H241_HUMAN      -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS
P04062                      -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS
pdb|pdb|3gxi_A              ------------------------------------------------------------
pdb|pdb|2nt1_A              ------------------------------------------------------------
tr|F6WDY8|F6WDY8_HORSE      -------------------------MELSSPSREGCLKCPGRVGIMAASFMGLLLLQAVS
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        -------------------------MELSSPSREEYPMPRGRVGIMAASLMGLLLLHTVS
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI
tr|F5H241|F5H241_HUMAN      WAS---------------------------------------------------------
P04062                      WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI
pdb|pdb|3gxi_A              ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI
pdb|pdb|2nt1_A              ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI
tr|F6WDY8|F6WDY8_HORSE      RASGARPCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPGTFSRYESTRSGRRMELSLGAI
tr|D1L2S0|D1L2S0_BALPH      -----------------VVCVCNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGAI
sp|Q2KHZ8|GLCM_BOVIN        WVSGARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI
tr|A9UD35|A9UD35_DELDE      ---------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI
tr|F5CB27|F5CB27_DELCA      ---------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY
tr|F5H241|F5H241_HUMAN      --------------------------------------------------------GIGY
P04062                      QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY
pdb|pdb|3gxi_A              QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY
pdb|pdb|2nt1_A              QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY
tr|F6WDY8|F6WDY8_HORSE      QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY
tr|D1L2S0|D1L2S0_BALPH      QANRTGTGLLLTLQPD--------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY
tr|A9UD35|A9UD35_DELDE      QANRTGTGLLLTLQPDQKFQKVKG------------------------------------
tr|F5CB27|F5CB27_DELCA      QANRTGTGLLLTLQPD--------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      NIIRVPMASCDFSIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLA
tr|F5H241|F5H241_HUMAN      NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
P04062                      NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
pdb|pdb|3gxi_A              NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
pdb|pdb|2nt1_A              NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA
tr|F6WDY8|F6WDY8_HORSE      NIIRVPMASCDFSIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFA
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        NIIRVPMASCDFSIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFA
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP
tr|F5H241|F5H241_HUMAN      SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP
P04062                      SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP
pdb|pdb|3gxi_A              SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP
pdb|pdb|2nt1_A              SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP
tr|F6WDY8|F6WDY8_HORSE      SPWTSPTWLKTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENEP
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        SPWTSPTWLKTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENEP
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL
tr|F5H241|F5H241_HUMAN      SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL
P04062                      SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL
pdb|pdb|3gxi_A              SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL
pdb|pdb|2nt1_A              SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL
tr|F6WDY8|F6WDY8_HORSE      SAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNVRVLMLDDQRLLLPRWAQVVL
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        TAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDVRLLMLDDQRLLLPRWAQVVL
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
tr|F5H241|F5H241_HUMAN      TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
P04062                      TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
pdb|pdb|3gxi_A              TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
pdb|pdb|2nt1_A              TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
tr|F6WDY8|F6WDY8_HORSE      ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPDMMLFASEACVGSKFWEQSVRLGS
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM
tr|F5H241|F5H241_HUMAN      WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM
P04062                      WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM
pdb|pdb|3gxi_A              WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM
pdb|pdb|2nt1_A              WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM
tr|F6WDY8|F6WDY8_HORSE      WDRGVQYSHSIITNLLYHVAGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        WDRGMRYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|F5H241|F5H241_HUMAN      FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
P04062                      FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
pdb|pdb|3gxi_A              FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
pdb|pdb|2nt1_A              FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|F6WDY8|F6WDY8_HORSE      FYHLGHFSKFIPEGSQRVGLDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPA
tr|D1L2S0|D1L2S0_BALPH      ------------------------------------------------------------
sp|Q2KHZ8|GLCM_BOVIN        FYHLGHFSKFIPEGSQRVGLVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPA
tr|A9UD35|A9UD35_DELDE      ------------------------------------------------------------
tr|F5CB27|F5CB27_DELCA      ------------------------------------------------------------
                                                                                        

tr|B7Z6S9|B7Z6S9_HUMAN      VGFLETISPGYSIHTYLWRRQ
tr|F5H241|F5H241_HUMAN      VGFLETISPGYSIHTYLWRRQ
P04062                      VGFLETISPGYSIHTYLWRRQ
pdb|pdb|3gxi_A              VGFLETISPGYSIHTYLWHRQ
pdb|pdb|2nt1_A              VGFLETISPGYSIHTYLWHRQ
tr|F6WDY8|F6WDY8_HORSE      VGFLETVSPGYSIHTYLWRRQ
tr|D1L2S0|D1L2S0_BALPH      ---------------------
sp|Q2KHZ8|GLCM_BOVIN        VGFMETVSPGYSIHTYLWRRQ
tr|A9UD35|A9UD35_DELDE      ---------------------
tr|F5CB27|F5CB27_DELCA      ---------------------