Sequence Alignments Hemochromatosis

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Revision as of 16:34, 6 May 2012 by Bernhoferm (talk | contribs) (Comparison)

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Task Description

Protocol

Sorry for the inconvenience (not beeing able to read something), we're rerunning some data...

Protocol

Reference Sequence

Sequence from Uniprot: Q30201

>sp|Q30201|HFE_HUMAN Hereditary hemochromatosis protein OS=Homo sapiens GN=HFE PE=1 SV=1
MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE

Sequence Searches

Blast

<figtable id="blastdist">

Hemo eval blast 80.png
Hemo ident blast 80.png
E-Value and identity distributions of the Blast search within Big80.

</figtable>

PSI-Blast

<figtable id="psiblastdist">

Hemo eval psi 80.png
Hemo ident psi 80.png
E-Value and identity distributions of the PSI-BLast search within Big80.

</figtable>

HHblits

<figtable id="hhblitsdist">

Hemo eval hhblits 80.png
Hemo ident hhblits 80.png
E-Value and identity distributions of the HHblits search within Uniprot20.

</figtable>

Comparison

<figtable id="psiblastoverlap">

Hemo Overlap PSI.png
Hemo Overlap PSI BIG.png
Hemo Overlap PSI BLAST.png
Nothing to see here....

</figtable>

<figtable id="alloverlap">

Hemo Overlap All 80.png
Hemo Overlap All BIG.png
Hemo Overlap PSI HHB BIG.png
Nothing to see here....

</figtable>

Multiple Sequence Alignments

Dataset

CLustalW

Muscle

T-Coffee