Labjournal NMA-Hemochromatosis

WebNM@ mode movies with pymol

<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA load ./modes_visualization/1a6zA.mode7.xyz, Mode7 load_traj ./modes_visualization/1a6zA.mode7.dcd, Mode7

hide everything, all show cartoon, 1a6zA show ribbon, Mode7

color green, 1a6zA color red, Mode7

mset 2 -10 -2 set ray_trace_frames, 1 set cache_frames=0 mclear set cartoon_transparency, 0.4

load modes_visualization/1A6Z.mode$i.xyz, Mode$i load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i hide everything, Mode$i show ribbon, Mode$i color red, Mode$i mclear mpng movies/movie$i/mode$i hide everything, Mode$i </source>

convert -delay 10 -loop 0 mode*.png mode$i.gif