Labjournal NMA-Hemochromatosis
From Bioinformatikpedia
WebNM@ mode movies with pymol
In order to make a movie from the c-alpha trajectory from WebNM@, the following PyMol script was used to generate a series of png images.
<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA
hide everything, all
show cartoon, 1a6zA
color green, 1a6zA
mset 2 -10 -2
set ray_trace_frames, 1
set cache_frames=0
mclear
set cartoon_transparency, 0.4
load modes_visualization/1A6Z.mode$i.xyz, Mode$i load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i hide everything, Mode$i show ribbon, Mode$i color red, Mode$i mclear mpng movies/movie$i/mode$i hide everything, Mode$i </source>
The png images were then converted into a gif animation using ImageMagick.
convert -delay 10 -loop 0 mode*.png mode$i.gif
