Task9 Hemochromatosis Protocol
From Bioinformatikpedia
Structure preparation
'perl repairPDB.pl 1a6z.ent C: -jprot -offset 22 > 1a6zC.pdb' 'perl repairPDB.pl 1de4.ent A: -jprot -offset 22 > 1de4A.pdb'
WEBnm@
Sample PyMol script for movie generation: <source lang="python">
- start
reinitialize load ../1a6zC.pdb, 1a6zC load ../webnma/modes_visualization/1a6zC.mode7.xyz, Mode load_traj ../webnma/modes_visualization/1a6zC.mode7.dcd, Mode
hide everything, all show cartoon, 1a6zC show spheres, Mode show mesh, Mode
color green, 1a6zC color red, Mode
mset 2 -10 -2 set ray_trace_frames, 1 set sphere_transparency, 0.7 </source>
ElNemo
Sample PyMol script for movie generation: <source lang="python">
- start
reinitialize load ../1a6zC.pdb, 1a6zC load ../elnemo/1a6zC/7.pdb, Mode
dss
hide everything, all show cartoon, all
color green, 1a6zC color red, Mode
mset 1 -11 -2
set ray_trace_frames, 1
</source>