Sequence Alignments Hemochromatosis

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Revision as of 15:54, 6 May 2012 by Bernhoferm (talk | contribs) (Sequence Searches)

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Task Description

Protocol

Sorry for the inconvenience (not beeing able to read something), we're rerunning some data...

Protocol

Reference Sequence

Sequence from Uniprot: Q30201

>sp|Q30201|HFE_HUMAN Hereditary hemochromatosis protein OS=Homo sapiens GN=HFE PE=1 SV=1
MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE

Sequence Searches

Blast

E-Value distribution of the Blast search within Big80.
Identity distribution of the Blast search within Big80.

PSI-Blast

E-Value distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.
Identity distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.

HHblits

E-Value distribution of the HHblits search within Uniprot20.
Identity distribution of the HHblits search within Uniprot20.

Comparison

Multiple Sequence Alignments

Dataset

CLustalW

Muscle

T-Coffee