Fabry:Sequence alignments (sequence searches and multiple alignments)/Journal

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Revision as of 13:54, 24 April 2012 by Rackersederj (talk | contribs) (→‎= Sequence searches)

Sequence searches

Blast

We searched the "big80" database with Blast with the following command:

blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700

Time

Method Time
Blast v = 700 1m30.985s
HHBlits default 2m24.603s
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