Talk:Fabry:Sequence alignments (sequence searches and multiple alignments)/Journal

From Bioinformatikpedia

I noticed you set "-v 700 -b 700". Is that enough to catch all hits up to the e-value limits? -- read the Task_alignments#Sequence_searches carefully... ;-) -- andrea 10:14, 3 May 2012 (UTC)

I actually thought it would be enough, since the instruction says "no more relevant hits are found." But maybe I misunderstood. What does relevant hit mean? --Rackersederj 14:03, 3 May 2012 (UTC)

We have the same problem. From the sentence cited by Julia we assumed we should set this constraint in a way that the returned hits end at an evalue that we would consider a maximum for relevant hits. This seems a bit strange since it comes down to setting an evalue threshold but that is the only senseful interpretation that came to our mind. --reebj 16:15, 3 May 2012 (UTC)