Difference between revisions of "Homology Modelling GLA"
From Bioinformatikpedia
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Following sequences have been selected: |
Following sequences have been selected: |
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+ | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] |
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− | !PDB-ID |
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+ | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] |
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− | !Identity |
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+ | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] |
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+ | | |
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− | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] ||97% |
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+ | |colspan = "2" |Automated Mode |
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+ | |colspan = "2" |Aligned Mode |
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+ | | |
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+ | |colspan = "2" |Automated Mode |
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+ | |colspan = "2" |Aligned Mode |
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+ | | |
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+ | |colspan = "2" |Automated Mode |
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+ | |colspan = "2" |Aligned Mode |
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+ | |Identity||Z-score ||Model||Z-score||Model |
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− | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] ||53% |
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+ | |Identity||Z-score ||Model||Z-score||Model |
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+ | |Identity||Z-score ||Model||Z-score||Model |
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+ | |97%|| 0|| ||0|| |
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− | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] ||26% |
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+ | |||
+ | |53% ||0|| ||0|| |
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+ | |||
+ | | 26%||Error¹|| NA ||Error¹|| NA |
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Revision as of 22:42, 9 June 2011
by Benjamin Drexler and Fabian Grandke
Calculation of Models
Available Homologous Structures
The HHpred search from Task1 output the following sequences(Top 10):
PDB-ID | Name | Probability | E-value | P-value | Identity |
---|---|---|---|---|---|
> 60% sequence identity | |||||
3hg3_A | Alpha-galactosidase A | 1.0 | 0 | 0 | 97% |
> 40% sequence identity | |||||
1ktb_A | Alpha-N-acetylgalactosaminidase | 1.0 | 0 | 0 | 53% |
< 40% sequence identity | |||||
1uas_A | Alpha-galactosidase | 1.0 | 0 | 0 | 39% |
3lrk_A | Alpha-galactosidase 1 | 1.0 | 0 | 0 | 32% |
3a5v_A | Alpha-galactosidase | 1.0 | 0 | 0 | 35% |
1szn_A | Alpha-galactosidase | 1.0 | 0 | 0 | 34% |
3a21_A | Putative secreted alpha-galactosidase | 1.0 | 0 | 0 | 34% |
3cc1_A | BH1870 protein | 1.0 | 0 | 0 | 26% |
3a24_A | Alpha-galactosidase | 1.0 | 0 | 0 | 14% |
1zy9_A | Alpha-galactosidase | 1.0 | 2.2E-37 | 8.8E-42 | 14% |
MODELLER
iTasser
SWISS-MODEL
Following sequences have been selected:
3hg3_A | 1ktb_A | 3cc1_A | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Automated Mode | Aligned Mode | Automated Mode | Aligned Mode | Automated Mode | Aligned Mode | |||||||||
Identity | Z-score | Model | Z-score | Model | Identity | Z-score | Model | Z-score | Model | Identity | Z-score | Model | Z-score | Model |
97% | 0 | 0 | 53% | 0 | 0 | 26% | Error¹ | NA | Error¹ | NA |
Evaluation of Models
MODELLER
Numeric Evaluation
Comparison to Experimental Structure
iTasser
Numeric Evaluation
Comparison to Experimental Structure
SWISS-MODEL
Numeric Evaluation
Comparison to Experimental Structure
References
<references />