Difference between revisions of "Homology Modelling GLA"
From Bioinformatikpedia
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Following sequences have been selected: |
Following sequences have been selected: |
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{|class="wikitable" border="1" style="text-align:center; border-spacing:0;" |
{|class="wikitable" border="1" style="text-align:center; border-spacing:0;" |
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| + | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] |
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| − | !PDB-ID |
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| + | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] |
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| − | !Identity |
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| + | !colspan = "5" |[http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] |
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| + | | |
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| − | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] ||97% |
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| + | |colspan = "2" |Automated Mode |
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| + | |colspan = "2" |Aligned Mode |
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| + | | |
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| + | |colspan = "2" |Automated Mode |
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| + | |colspan = "2" |Aligned Mode |
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| + | | |
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| + | |colspan = "2" |Automated Mode |
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| + | |colspan = "2" |Aligned Mode |
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| + | |Identity||Z-score ||Model||Z-score||Model |
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| − | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] ||53% |
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| + | |Identity||Z-score ||Model||Z-score||Model |
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| + | |Identity||Z-score ||Model||Z-score||Model |
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| + | |97%|| 0|| ||0|| |
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| − | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] ||26% |
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| + | |||
| + | |53% ||0|| ||0|| |
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| + | |||
| + | | 26%||Error¹|| NA ||Error¹|| NA |
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Revision as of 22:42, 9 June 2011
by Benjamin Drexler and Fabian Grandke
Calculation of Models
Available Homologous Structures
The HHpred search from Task1 output the following sequences(Top 10):
| PDB-ID | Name | Probability | E-value | P-value | Identity |
|---|---|---|---|---|---|
| > 60% sequence identity | |||||
| 3hg3_A | Alpha-galactosidase A | 1.0 | 0 | 0 | 97% |
| > 40% sequence identity | |||||
| 1ktb_A | Alpha-N-acetylgalactosaminidase | 1.0 | 0 | 0 | 53% |
| < 40% sequence identity | |||||
| 1uas_A | Alpha-galactosidase | 1.0 | 0 | 0 | 39% |
| 3lrk_A | Alpha-galactosidase 1 | 1.0 | 0 | 0 | 32% |
| 3a5v_A | Alpha-galactosidase | 1.0 | 0 | 0 | 35% |
| 1szn_A | Alpha-galactosidase | 1.0 | 0 | 0 | 34% |
| 3a21_A | Putative secreted alpha-galactosidase | 1.0 | 0 | 0 | 34% |
| 3cc1_A | BH1870 protein | 1.0 | 0 | 0 | 26% |
| 3a24_A | Alpha-galactosidase | 1.0 | 0 | 0 | 14% |
| 1zy9_A | Alpha-galactosidase | 1.0 | 2.2E-37 | 8.8E-42 | 14% |
MODELLER
iTasser
SWISS-MODEL
Following sequences have been selected:
| 3hg3_A | 1ktb_A | 3cc1_A | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Automated Mode | Aligned Mode | Automated Mode | Aligned Mode | Automated Mode | Aligned Mode | |||||||||
| Identity | Z-score | Model | Z-score | Model | Identity | Z-score | Model | Z-score | Model | Identity | Z-score | Model | Z-score | Model |
| 97% | 0 | 0 | 53% | 0 | 0 | 26% | Error¹ | NA | Error¹ | NA | ||||
Evaluation of Models
MODELLER
Numeric Evaluation
Comparison to Experimental Structure
iTasser
Numeric Evaluation
Comparison to Experimental Structure
SWISS-MODEL
Numeric Evaluation
Comparison to Experimental Structure
References
<references />
