Difference between revisions of "Labjournal NMA-Hemochromatosis"
From Bioinformatikpedia
(Created page with " == WebNM@ mode movies with pymol == reinitialize load ./1A6ZA.pdb, 1A6ZA load ./modes_visualization/1a6zA.mode7.xyz, Mode7 load_traj ./modes_visualization/1a6zA.mode7.dcd, Mod…") |
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== WebNM@ mode movies with pymol == |
== WebNM@ mode movies with pymol == |
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| + | <source lang="python"> |
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reinitialize |
reinitialize |
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load ./1A6ZA.pdb, 1A6ZA |
load ./1A6ZA.pdb, 1A6ZA |
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mpng movies/movie$i/mode$i |
mpng movies/movie$i/mode$i |
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hide everything, Mode$i |
hide everything, Mode$i |
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| + | </source> |
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convert -delay 10 -loop 0 mode*.png mode$i.gif |
convert -delay 10 -loop 0 mode*.png mode$i.gif |
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Revision as of 12:48, 11 August 2013
WebNM@ mode movies with pymol
<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA load ./modes_visualization/1a6zA.mode7.xyz, Mode7 load_traj ./modes_visualization/1a6zA.mode7.dcd, Mode7
hide everything, all show cartoon, 1a6zA show ribbon, Mode7
color green, 1a6zA
color red, Mode7
mset 2 -10 -2 set ray_trace_frames, 1 set cache_frames=0 mclear set cartoon_transparency, 0.4
load modes_visualization/1A6Z.mode$i.xyz, Mode$i
load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i
hide everything, Mode$i
show ribbon, Mode$i
color red, Mode$i
mclear
mpng movies/movie$i/mode$i
hide everything, Mode$i
</source>
convert -delay 10 -loop 0 mode*.png mode$i.gif
