Difference between revisions of "Task3 Hemochromatosis Protocol"

From Bioinformatikpedia
(Created page with "== Data Acquisition == === Secondary Structure === === Disorder === === Transmembrane Helices === === Signal Peptides === === GO Terms ===")
 
(→‎Data Acquisition)
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== Data Acquisition ==
  
== Data Acquisition ==
  +
  +
Retrieve all sequences:
  +
<source lang="bash">
  +
#!/bin/bash
  +
  +
#Secondary Structure
  +
cd /mnt/home/student/bernhoferm/mstrprkt/task3/ss/fasta/
  +
  +
wget http://www.uniprot.org/uniprot/Q30201.fasta
  +
wget http://www.uniprot.org/uniprot/P10775.fasta
  +
wget http://www.uniprot.org/uniprot/Q9X0E6.fasta
  +
wget http://www.uniprot.org/uniprot/Q08209.fasta
  +
  +
  +
#Disorder
  +
cd /mnt/home/student/bernhoferm/mstrprkt/task3/disorder/fasta/
  +
  +
wget http://www.uniprot.org/uniprot/Q30201.fasta
  +
wget http://www.uniprot.org/uniprot/P10775.fasta
  +
wget http://www.uniprot.org/uniprot/Q9X0E6.fasta
  +
wget http://www.uniprot.org/uniprot/Q08209.fasta
  +
  +
  +
#Transmembrane Helices
  +
cd /mnt/home/student/bernhoferm/mstrprkt/task3/tmh/fasta/
  +
  +
wget http://www.uniprot.org/uniprot/Q30201.fasta
  +
wget http://www.uniprot.org/uniprot/P35462.fasta
  +
wget http://www.uniprot.org/uniprot/Q9YDF8.fasta
  +
wget http://www.uniprot.org/uniprot/P47863.fasta
  +
  +
  +
#Signal Peptides
  +
cd /mnt/home/student/bernhoferm/mstrprkt/task3/sp/fasta/
  +
  +
wget http://www.uniprot.org/uniprot/Q30201.fasta
  +
wget http://www.uniprot.org/uniprot/P02768.fasta
  +
wget http://www.uniprot.org/uniprot/P47863.fasta
  +
wget http://www.uniprot.org/uniprot/P11279.fasta
  +
</source>
   
 
=== Secondary Structure ===
  
=== Secondary Structure ===

Revision as of 11:57, 17 May 2012

Data Acquisition

Retrieve all sequences: <source lang="bash">

  1. !/bin/bash
  1. Secondary Structure

cd /mnt/home/student/bernhoferm/mstrprkt/task3/ss/fasta/

wget http://www.uniprot.org/uniprot/Q30201.fasta wget http://www.uniprot.org/uniprot/P10775.fasta wget http://www.uniprot.org/uniprot/Q9X0E6.fasta wget http://www.uniprot.org/uniprot/Q08209.fasta


  1. Disorder

cd /mnt/home/student/bernhoferm/mstrprkt/task3/disorder/fasta/

wget http://www.uniprot.org/uniprot/Q30201.fasta wget http://www.uniprot.org/uniprot/P10775.fasta wget http://www.uniprot.org/uniprot/Q9X0E6.fasta wget http://www.uniprot.org/uniprot/Q08209.fasta


  1. Transmembrane Helices

cd /mnt/home/student/bernhoferm/mstrprkt/task3/tmh/fasta/

wget http://www.uniprot.org/uniprot/Q30201.fasta wget http://www.uniprot.org/uniprot/P35462.fasta wget http://www.uniprot.org/uniprot/Q9YDF8.fasta wget http://www.uniprot.org/uniprot/P47863.fasta


  1. Signal Peptides

cd /mnt/home/student/bernhoferm/mstrprkt/task3/sp/fasta/

wget http://www.uniprot.org/uniprot/Q30201.fasta wget http://www.uniprot.org/uniprot/P02768.fasta wget http://www.uniprot.org/uniprot/P47863.fasta wget http://www.uniprot.org/uniprot/P11279.fasta </source>

Secondary Structure

Disorder

Transmembrane Helices

Signal Peptides

GO Terms

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