Difference between revisions of "Sequence Alignments Hemochromatosis"

From Bioinformatikpedia
(Blast)
(PSI-Blast)
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=== PSI-Blast ===
 
=== PSI-Blast ===
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[[File:hemo_eval_psi_80.png|thumb|600px|right|E-Value distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.]]
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[[File:hemo_ident_psi_80.png|thumb|600px|right|Identity distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.]]
   
 
=== HHblits ===
 
=== HHblits ===

Revision as of 15:52, 6 May 2012

Henry Frankenstein: Look! It's moving. It's alive. It's alive... It's alive, it's moving, it's alive, it's alive, it's alive, it's alive, IT'S ALIVE!

Victor Moritz: Henry - In the name of God!

Henry Frankenstein: Oh, in the name of God! Now I know what it feels like to be God!

Task Description

Protocol

Sorry for the inconvenience (not beeing able to read something), we're rerunning some data...

Protocol

Reference Sequence

Sequence from Uniprot: Q30201

>sp|Q30201|HFE_HUMAN Hereditary hemochromatosis protein OS=Homo sapiens GN=HFE PE=1 SV=1
MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF
YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV
ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR
AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL
KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS
PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE

Sequence Searches

Blast

E-Value distribution of the Blast search within Big80.
Identity distribution of the Blast search within Big80.

PSI-Blast

E-Value distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.
Identity distribution of the PSI-Blast search within Big80. The different values for h (0.002, 1e-10) and j (2, 10) are color-coded.

HHblits

Multiple Sequence Alignments