Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments):Results"

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(→‎Blast)
(→‎Sequence searches: HHblits new plots added n8_neu)
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Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
  
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
 
| [[File:hhblits_default.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits hits for P06280]]
  
| [[File:hhblits_default.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits hits for P06280]]
  +
|}
  +
  +
{| class="centered"
  +
| [[File:hhblits_default_Similarity.png|thumb| Histogram of the similarity of the BLAST hits to P06280]]
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| [[File:hhblits_default_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280]]
 
|}
  
|}
 
==== 8 iterations ====
  
==== 8 iterations ====
 
{| class="centered"
  
{| class="centered"
−
| [[File:hhblits_n8_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared.
 +
| [[File:hhblits_n8_neu_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared.
 
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
  
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
−
| [[File:hhblits_n8.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]]
 +
| [[File:hhblits_n8_neu.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]]
  +
|}
  +
  +
{| class="centered"
  +
| [[File:hhblits_n8_neu_Similarity.png|thumb| Histogram of the similarity of the BLAST hits (search with 8 iterations) to P06280]]
  +
| [[File:hhblits_n8_neu_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the BLAST hits (search with 8 iterations) for P06280]]
 
|}
  
|}
 
=== Comparison ===
  
=== Comparison ===

Revision as of 13:48, 4 May 2012

Please see Task 2 for our scripts and line of action on this topic.

Sequence searches

Blast

GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the BLAST hits for P06280
Histogram of the positive amino acids of the pairwise alignments of the BLAST hits for P06280
Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280
Histogram of the length of the BLAST hits for P06280

Psi-Blast

HHblits

2 iterations - default

GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits hits for P06280
Histogram of the similarity of the BLAST hits to P06280
Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280

8 iterations

GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280
Histogram of the similarity of the BLAST hits (search with 8 iterations) to P06280
Histogram of the identical amino acids of the pairwise alignments of the BLAST hits (search with 8 iterations) for P06280

Comparison

Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations
Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations
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