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=== Comparison === |
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=== Comparison === |
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[[File:venn_blast_hhblits.png|thumb|right| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]] |
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[[File:venn_blast_hhblits.png|thumb|right| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]] |
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[[File:venn_blast_hhblits_best100.png|thumb|right| Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations]] |
Revision as of 20:52, 3 May 2012
Please see Task 2 for our skripts and line of action on this topic.
Sequence searches
Blast
GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the BLAST hits for P06280
Psi-Blast
HHblits
2 iterations - default
GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits hits for P06280
8 iterations
GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280
Comparison
Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations
Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations
