Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments):Results"

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m (→‎HHblits / HHsearch)
(HHblits edited, plots added)
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=== HHblits ===
  
=== HHblits ===
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==== 2 iterations - default ====
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[[File:hhblits_default_ids_GOterms_comparison.png|thumb|left| GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared.
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Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
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[[File:hhblits_default.out_Evalues.png|thumb|right| Histogram of the logarithmic E-values of the HHblits hits for P06280]]
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==== 8 iterations ====
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[[File:hhblits_n8_ids_GOterms_comparison.png|thumb|left| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared.
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Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
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[[File:hhblits_n8.out_Evalues.png|thumb|right| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]]
   
 
=== Comparison ===
  
=== Comparison ===

Revision as of 20:36, 3 May 2012

Please see Task 2 for our skripts and line of action on this topic.

Sequence searches

Blast

GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the BLAST hits for P06280

Psi-Blast

HHblits

2 iterations - default

GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits hits for P06280

8 iterations

GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280

Comparison

Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations
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