Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments)/Journal"
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− | === |
+ | === Sequence searches == |
+ | ==== Blast ==== |
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+ | We searched the "big80" database with Blast with the following command: |
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+ | <code>blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700</code> |
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+ | == Time == |
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Revision as of 13:54, 24 April 2012
= Sequence searches
Blast
We searched the "big80" database with Blast with the following command:
blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700
Time
Method | Time |
---|---|
Blast v = 700 | 1m30.985s |
HHBlits default | 2m24.603s |