Difference between revisions of "Homology Modelling GLA"
From Bioinformatikpedia
(→Calculation of Models) |
(→Calculation of Models) |
||
Line 45: | Line 45: | ||
==SWISS-MODEL== |
==SWISS-MODEL== |
||
+ | Following sequences have been selected: |
||
+ | {|class="wikitable" border="1" style="text-align:center; border-spacing:0;" |
||
+ | !PDB-ID |
||
+ | !Identity |
||
+ | |- |
||
+ | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] ||97% |
||
+ | |- |
||
+ | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] ||53% |
||
+ | |- |
||
+ | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] ||26% |
||
+ | |} |
||
=Evaluation of Models= |
=Evaluation of Models= |
Revision as of 20:53, 9 June 2011
by Benjamin Drexler and Fabian Grandke
Calculation of Models
Available Homologous Structures
The HHpred search from Task1 output the following sequences(Top 10):
PDB-ID | Name | Probability | E-value | P-value | Identity |
---|---|---|---|---|---|
> 60% sequence identity | |||||
3hg3_A | Alpha-galactosidase A | 1.0 | 0 | 0 | 97% |
> 40% sequence identity | |||||
1ktb_A | Alpha-N-acetylgalactosaminidase | 1.0 | 0 | 0 | 53% |
< 40% sequence identity | |||||
1uas_A | Alpha-galactosidase | 1.0 | 0 | 0 | 39% |
3lrk_A | Alpha-galactosidase 1 | 1.0 | 0 | 0 | 32% |
3a5v_A | Alpha-galactosidase | 1.0 | 0 | 0 | 35% |
1szn_A | Alpha-galactosidase | 1.0 | 0 | 0 | 34% |
3a21_A | Putative secreted alpha-galactosidase | 1.0 | 0 | 0 | 34% |
3cc1_A | BH1870 protein | 1.0 | 0 | 0 | 26% |
3a24_A | Alpha-galactosidase | 1.0 | 0 | 0 | 14% |
1zy9_A | Alpha-galactosidase | 1.0 | 2.2E-37 | 8.8E-42 | 14% |
MODELLER
iTasser
SWISS-MODEL
Following sequences have been selected:
PDB-ID | Identity |
---|---|
3hg3_A | 97% |
1ktb_A | 53% |
3cc1_A | 26% |
Evaluation of Models
MODELLER
Numeric Evaluation
Comparison to Experimental Structure
iTasser
Numeric Evaluation
Comparison to Experimental Structure
SWISS-MODEL
Numeric Evaluation
Comparison to Experimental Structure
References
<references />