Difference between revisions of "Homology Modeling of ARS A"
From Bioinformatikpedia
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!SeqIdentifier |
!SeqIdentifier |
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| − | !Seq Identity |
+ | !Seq Identity (from TASK 2) |
!source |
!source |
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!Protein function |
!Protein function |
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| + | !True homolog (HSSP) |
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| + | !Seq Identity (pairw. ali.) |
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| − | |1P49|| 39.0% || Homo Sapiens || Steryl-Sulfatase |
+ | |1P49|| 39.0% || Homo Sapiens || Steryl-Sulfatase || yes || ? |
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| − | |1FSU|| 28.0% || Homo Sapiens || |
+ | |1FSU|| 28.0% || Homo Sapiens || Arylsulfatase B || yes || ? |
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| − | |2VQR|| 20.0% ||Rhizobium leguminosarum || Sulfatase |
+ | |2VQR|| 20.0% ||Rhizobium leguminosarum || Sulfatase || no || ? |
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| − | |3ED4|| 32.0% || Escherichia coli || Arylsulfatase |
+ | |3ED4|| 32.0% || Escherichia coli || Arylsulfatase || yes || ? |
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| + | Our potential tmeplates, identified by the database searches contain all homologs with known structure, regarding to HSSP. |
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== Modeller == |
== Modeller == |
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Revision as of 12:09, 7 June 2011
Proteins used as templates
We identified the following proteins (see Alignment TASK) as potential targets for homology modeling:used the following
| SeqIdentifier | Seq Identity (from TASK 2) | source | Protein function | True homolog (HSSP) | Seq Identity (pairw. ali.) |
|---|---|---|---|---|---|
| 1P49 | 39.0% | Homo Sapiens | Steryl-Sulfatase | yes | ? |
| 1FSU | 28.0% | Homo Sapiens | Arylsulfatase B | yes | ? |
| 2VQR | 20.0% | Rhizobium leguminosarum | Sulfatase | no | ? |
| 3ED4 | 32.0% | Escherichia coli | Arylsulfatase | yes | ? |
Our potential tmeplates, identified by the database searches contain all homologs with known structure, regarding to HSSP.
