Difference between revisions of "Labjournal NMA-Hemochromatosis"
From Bioinformatikpedia
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reinitialize |
reinitialize |
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load ./1A6ZA.pdb, 1A6ZA |
load ./1A6ZA.pdb, 1A6ZA |
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| + | |||
| − | load ./modes_visualization/1a6zA.mode7.xyz, Mode7 |
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| − | load_traj ./modes_visualization/1a6zA.mode7.dcd, Mode7 |
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hide everything, all |
hide everything, all |
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show cartoon, 1a6zA |
show cartoon, 1a6zA |
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| + | color green, 1a6zA |
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| − | show ribbon, Mode7 |
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| − | |||
| − | color green, 1a6zA |
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| − | color red, Mode7 |
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mset 2 -10 -2 |
mset 2 -10 -2 |
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mclear |
mclear |
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set cartoon_transparency, 0.4 |
set cartoon_transparency, 0.4 |
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| + | |||
Revision as of 12:51, 11 August 2013
WebNM@ mode movies with pymol
<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA
hide everything, all
show cartoon, 1a6zA
color green, 1a6zA
mset 2 -10 -2
set ray_trace_frames, 1
set cache_frames=0
mclear
set cartoon_transparency, 0.4
load modes_visualization/1A6Z.mode$i.xyz, Mode$i load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i hide everything, Mode$i show ribbon, Mode$i color red, Mode$i mclear mpng movies/movie$i/mode$i hide everything, Mode$i </source>
convert -delay 10 -loop 0 mode*.png mode$i.gif
