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| [[File:hhblits_default_Similarity.png|thumb| Histogram of the similarity of the BLAST hits to P06280]] |
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| [[File:hhblits_default_Similarity.png|thumb| Histogram of the similarity of the HHblits hits to P06280]] |
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| [[File:hhblits_default_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280]] |
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| [[File:hhblits_default_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the HHblits hits for P06280]] |
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==== 8 iterations ==== |
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==== 8 iterations ==== |
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Revision as of 13:52, 4 May 2012
Please see Task 2 for our scripts and line of action on this topic.
Sequence searches
Blast
 GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the BLAST hits for P06280 |
 Histogram of the positive amino acids of the pairwise alignments of the BLAST hits for P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280 |
 Histogram of the length of the BLAST hits for P06280 |
Psi-Blast
HHblits
2 iterations - default
 GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the HHblits hits for P06280 |
 Histogram of the similarity of the HHblits hits to P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the HHblits hits for P06280 |
8 iterations
 GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280 |
 Histogram of the similarity of the BLAST hits (search with 8 iterations) to P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the BLAST hits (search with 8 iterations) for P06280 |
Comparison
 Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations |
 Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations |
