Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments):Results"
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Rackersederj (talk | contribs) (→Blast) |
Rackersederj (talk | contribs) (→Sequence searches: HHblits new plots added n8_neu) |
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Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]] |
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]] |
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| [[File:hhblits_default.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits hits for P06280]] |
| [[File:hhblits_default.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits hits for P06280]] |
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+ | |} |
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+ | |||
+ | {| class="centered" |
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+ | | [[File:hhblits_default_Similarity.png|thumb| Histogram of the similarity of the BLAST hits to P06280]] |
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+ | | [[File:hhblits_default_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280]] |
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==== 8 iterations ==== |
==== 8 iterations ==== |
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{| class="centered" |
{| class="centered" |
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− | | [[File: |
+ | | [[File:hhblits_n8_neu_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. |
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]] |
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]] |
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− | | [[File: |
+ | | [[File:hhblits_n8_neu.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]] |
+ | |} |
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+ | |||
+ | {| class="centered" |
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+ | | [[File:hhblits_n8_neu_Similarity.png|thumb| Histogram of the similarity of the BLAST hits (search with 8 iterations) to P06280]] |
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+ | | [[File:hhblits_n8_neu_Identities.png|thumb| Histogram of the identical amino acids of the pairwise alignments of the BLAST hits (search with 8 iterations) for P06280]] |
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=== Comparison === |
=== Comparison === |
Revision as of 14:48, 4 May 2012
Please see Task 2 for our scripts and line of action on this topic.