Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments):Results"

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m (→‎Sequence searches)
m (→‎Sequence searches: Figures centered)
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== Sequence searches ==
  
== Sequence searches ==
 
=== Blast ===
  
=== Blast ===
  +
{| class="centered"
−
[[File:Blastsearch_default_v700_ids_GOterms_comparison.png|thumb|left| GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared.
  
  +
| [[File:Blastsearch_default_v700_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared.
 
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
  
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
−
[[File:blastsearch_default_v700_Evalues.png|thumb|right| Histogram of the logarithmic E-values of the BLAST hits for P06280]]
 +
| [[File:blastsearch_default_v700_Evalues.png|thumb| Histogram of the logarithmic E-values of the BLAST hits for P06280]]
  +
|}
−  
 
=== Psi-Blast ===
  
=== Psi-Blast ===
   
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=== HHblits ===
  
=== HHblits ===
 
==== 2 iterations - default ====
  
==== 2 iterations - default ====
  +
{| class="centered"
−
[[File:hhblits_default_ids_GOterms_comparison.png|thumb|left| GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared.
  
  +
| [[File:hhblits_default_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared.
 
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
  
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
−
[[File:hhblits_default.out_Evalues.png|thumb|right| Histogram of the logarithmic E-values of the HHblits hits for P06280]]
 +
| [[File:hhblits_default.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits hits for P06280]]
  +
|}
−  
 
==== 8 iterations ====
  
==== 8 iterations ====
  +
{| class="centered"
−
[[File:hhblits_n8_ids_GOterms_comparison.png|thumb|left| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared.
  
  +
| [[File:hhblits_n8_ids_GOterms_comparison.png|thumb| GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared.
 
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
  
Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit]]
−
[[File:hhblits_n8.out_Evalues.png|thumb|right| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]]
 +
| [[File:hhblits_n8.out_Evalues.png|thumb| Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280]]
  +
|}
−  
 
=== Comparison ===
  
=== Comparison ===
  +
{| class="centered"
−
[[File:venn_blast_hhblits.png|thumb|right| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]]
  
−
[[File:venn_blast_hhblits_best100.png|thumb|right| Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations]]
 +
| [[File:venn_blast_hhblits.png|thumb| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]]
  +
| [[File:venn_blast_hhblits_best100.png|thumb| Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations]]
  +
|}

Revision as of 22:03, 3 May 2012

Please see Task 2 for our skripts and line of action on this topic.

Sequence searches

Blast

GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the BLAST hits for P06280

Psi-Blast

HHblits

2 iterations - default

GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits hits for P06280

8 iterations

GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit
Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280

Comparison

Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations
Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations
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