Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments)/Journal"
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| − | + | == Sequence searches == |
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==== Blast ==== |
==== Blast ==== |
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We searched the "big80" database with Blast with the following command: |
We searched the "big80" database with Blast with the following command: |
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| − | <code>blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700</code> |
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| + | <code>blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700</code> |
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== Time == |
== Time == |
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Revision as of 13:54, 24 April 2012
Sequence searches
Blast
We searched the "big80" database with Blast with the following command:
blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700
Time
| Method | Time |
|---|---|
| Blast v = 700 | 1m30.985s |
| HHBlits default | 2m24.603s |
