Difference between revisions of "Fabry:Sequence alignments (sequence searches and multiple alignments)/Journal"
From Bioinformatikpedia
Rackersederj (talk | contribs) (→Time) |
Rackersederj (talk | contribs) (→Time) |
||
| Line 1: | Line 1: | ||
| − | === |
+ | === Sequence searches == |
| + | ==== Blast ==== |
||
| + | We searched the "big80" database with Blast with the following command: |
||
| + | <code>blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700</code> |
||
| + | |||
| + | |||
| + | == Time == |
||
{|style="border-collapse: separate; border-spacing: 0; border-width: 1px; border-style: solid; border-color: #000; padding: 0; align: center; " width="85%" |
{|style="border-collapse: separate; border-spacing: 0; border-width: 1px; border-style: solid; border-color: #000; padding: 0; align: center; " width="85%" |
||
Revision as of 13:54, 24 April 2012
= Sequence searches
Blast
We searched the "big80" database with Blast with the following command:
blastall -p blastp -d /mnt/project/pracstrucfunc12/data/big/big_80 -i P06280.fasta -m 0 -o blastsearch_default.out -v 700
Time
| Method | Time |
|---|---|
| Blast v = 700 | 1m30.985s |
| HHBlits default | 2m24.603s |
