Difference between revisions of "Sequence and multiple alignments"
From Bioinformatikpedia
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=Sequence Alignments= |
=Sequence Alignments= |
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| + | Blastaufruf: ''blast -p blastp -i 1a6z.fasta -d /data/nr/nr -o blastp_1a6z_on_NR.txt'' runtime 5:34<br> |
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| + | Fastaaufruf: ''../../Desktop/fasta-36.3.4/bin/fasta36 -q 1a6z.fasta /data/nr/nr >fasta_1a5z_on_nr.txt'' runtime 10:44<br> |
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| + | <br> |
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| + | psiblast: ''blastpgp -i 1a6z.fasta -d /data/nr/nr'' runtime 21:40 <br> |
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| + | ''blastpgp -i 1a6z.fasta -d /data/nr/nr -j 6 -e 10E-6 > psiblast_on_NR_itera3_e-val_10E-6.txt'' <br> |
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| + | ''blastpgp -i 1a6z.fasta -d /data/nr/nr -j 3 -e 10E-6 > psiblast_on_NR_itera6_e-val_10E-6.txt'' runtime 15:08<br> |
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| + | ''blastpgp -i 1a6z.fasta -d /data/nr/nr -j 3 > psiblast_on_NR_itera3.txt'' runtime 9:41<br> |
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| + | ''blastpgp -i 1a6z.fasta -d /data/nr/nr -j 6 > psiblast_on_NR_itera6.txt'' |
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=Multiple Alignments= |
=Multiple Alignments= |
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Revision as of 17:53, 23 May 2011
Sequence Alignments
Blastaufruf: blast -p blastp -i 1a6z.fasta -d /data/nr/nr -o blastp_1a6z_on_NR.txt runtime 5:34
Fastaaufruf: ../../Desktop/fasta-36.3.4/bin/fasta36 -q 1a6z.fasta /data/nr/nr >fasta_1a5z_on_nr.txt runtime 10:44
psiblast: blastpgp -i 1a6z.fasta -d /data/nr/nr runtime 21:40
blastpgp -i 1a6z.fasta -d /data/nr/nr -j 6 -e 10E-6 > psiblast_on_NR_itera3_e-val_10E-6.txt
blastpgp -i 1a6z.fasta -d /data/nr/nr -j 3 -e 10E-6 > psiblast_on_NR_itera6_e-val_10E-6.txt runtime 15:08
blastpgp -i 1a6z.fasta -d /data/nr/nr -j 3 > psiblast_on_NR_itera3.txt runtime 9:41
blastpgp -i 1a6z.fasta -d /data/nr/nr -j 6 > psiblast_on_NR_itera6.txt
