Difference between revisions of "Labjournal NMA-Hemochromatosis"
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== WebNM@ mode movies with pymol == |
== WebNM@ mode movies with pymol == |
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| + | In order to make a movie from the c-alpha trajectory from WebNM@, the following PyMol script was used to generate a series of png images. |
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<source lang="python"> |
<source lang="python"> |
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</source> |
</source> |
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| + | The png images were then converted into a gif animation using ImageMagick. |
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| − | convert -delay 10 -loop 0 mode*.png mode$i.gif |
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| + | convert -delay 10 -loop 0 mode*.png mode$i.gif |
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Latest revision as of 21:09, 1 September 2013
WebNM@ mode movies with pymol
In order to make a movie from the c-alpha trajectory from WebNM@, the following PyMol script was used to generate a series of png images.
<source lang="python"> reinitialize load ./1A6ZA.pdb, 1A6ZA
hide everything, all
show cartoon, 1a6zA
color green, 1a6zA
mset 2 -10 -2
set ray_trace_frames, 1
set cache_frames=0
mclear
set cartoon_transparency, 0.4
load modes_visualization/1A6Z.mode$i.xyz, Mode$i load_traj ./modes_visualization/1A6Z.mode$i.dcd, Mode$i hide everything, Mode$i show ribbon, Mode$i color red, Mode$i mclear mpng movies/movie$i/mode$i hide everything, Mode$i </source>
The png images were then converted into a gif animation using ImageMagick.
convert -delay 10 -loop 0 mode*.png mode$i.gif
