Difference between revisions of "Homology Modelling GLA"
From Bioinformatikpedia
(Created page with "<sup>by Benjamin Drexler and Fabian Grandke</sup> =Calculation of Models= ==Available Homologous Structures== ==MODELLER== ==iTasser== ==SWIS…") |
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=Calculation of Models= |
=Calculation of Models= |
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==Available Homologous Structures== |
==Available Homologous Structures== |
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| + | The HHpred search from [[Sequence_Alignment_GLA#HHsearch | Task1]] output the following sequences(Top 10): |
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| + | |||
| + | {|class="wikitable" border="1" style="text-align:center; border-spacing:0;" |
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| + | !PDB-ID |
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| + | !Name |
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| + | !Probability |
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| + | !E-value |
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| + | !P-value |
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| + | !Identity |
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| + | |- |
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| + | |colspan="6" |''' > 60% sequence identity ''' |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3HG3 3hg3_A] || Alpha-galactosidase A|| 1.0 || 0 || 0 ||97% |
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| + | |- |
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| + | |colspan="6" |''' > 40% sequence identity ''' |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1KTB 1ktb_A] || Alpha-N-acetylgalactosaminidase || 1.0 || 0 || 0 ||53% |
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| + | |- |
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| + | |colspan="6" |''' < 40% sequence identity ''' |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1UAS 1uas_A] || Alpha-galactosidase || 1.0 || 0 || 0 ||39% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3LRK 3lrk_A] || Alpha-galactosidase 1 || 1.0 || 0 || 0 ||32% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3A5V 3a5v_A] || Alpha-galactosidase|| 1.0 || 0 || 0 ||35% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1SZN 1szn_A] || Alpha-galactosidase || 1.0 || 0 || 0 ||34% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3A21 3a21_A] || Putative secreted alpha-galactosidase || 1.0 || 0 || 0 ||34% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3CC1 3cc1_A] || BH1870 protein || 1.0 || 0 || 0 ||26% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=3A24 3a24_A] || Alpha-galactosidase || 1.0 || 0 || 0 ||14% |
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| + | |- |
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| + | | [http://www.pdb.org/pdb/explore/explore.do?structureId=1ZY9 1zy9_A] || Alpha-galactosidase || 1.0 || 2.2E-37 || 8.8E-42 || 14% |
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| + | |} |
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| + | |||
==MODELLER== |
==MODELLER== |
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Revision as of 02:02, 9 June 2011
by Benjamin Drexler and Fabian Grandke
Calculation of Models
Available Homologous Structures
The HHpred search from Task1 output the following sequences(Top 10):
| PDB-ID | Name | Probability | E-value | P-value | Identity |
|---|---|---|---|---|---|
| > 60% sequence identity | |||||
| 3hg3_A | Alpha-galactosidase A | 1.0 | 0 | 0 | 97% |
| > 40% sequence identity | |||||
| 1ktb_A | Alpha-N-acetylgalactosaminidase | 1.0 | 0 | 0 | 53% |
| < 40% sequence identity | |||||
| 1uas_A | Alpha-galactosidase | 1.0 | 0 | 0 | 39% |
| 3lrk_A | Alpha-galactosidase 1 | 1.0 | 0 | 0 | 32% |
| 3a5v_A | Alpha-galactosidase | 1.0 | 0 | 0 | 35% |
| 1szn_A | Alpha-galactosidase | 1.0 | 0 | 0 | 34% |
| 3a21_A | Putative secreted alpha-galactosidase | 1.0 | 0 | 0 | 34% |
| 3cc1_A | BH1870 protein | 1.0 | 0 | 0 | 26% |
| 3a24_A | Alpha-galactosidase | 1.0 | 0 | 0 | 14% |
| 1zy9_A | Alpha-galactosidase | 1.0 | 2.2E-37 | 8.8E-42 | 14% |
MODELLER
iTasser
SWISS-MODEL
Evaluation of Models
MODELLER
Numeric Evaluation
Comparison to Experimental Structure
iTasser
Numeric Evaluation
Comparison to Experimental Structure
SWISS-MODEL
Numeric Evaluation
Comparison to Experimental Structure
References
<references />
