Difference between revisions of "Canavan Disease: Task 02 - Supplement"
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== Multiple Sequence Alignments == |
== Multiple Sequence Alignments == |
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| + | Visual representation of the multiple sequence alignments. Unfortunately it is not possible using Chimera to display the names of the sequences. Those can be extracted separately and will be presented on request. Since the Wiki is not able to handle files above 2MB, some alignments could not be uploaded. Those are also presented on request. |
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<figtable id="MSAPics"> |
<figtable id="MSAPics"> |
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|rowspan="3"| MAFFT |
|rowspan="3"| MAFFT |
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| + | || above60 || <figure id="Maa6">[[Image:CanavanMafftAbove60Alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || above60 || XXX |
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| + | || below30 || <figure id="Mab3">[[Image:CanavanAlignment_MafftBelow30-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || below30 || xxx |
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| − | || wholeRange || |
+ | || wholeRange || to be presented on request, since file size too large |
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|rowspan="3"| MUSCLE |
|rowspan="3"| MUSCLE |
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| + | || above60 || <figure id="Mua6">[[Image:CanavanAlignment_MuscleAbove60-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || above60 || XXX |
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| + | || below30 || <figure id="Mub3">[[Image:CanavanAlignment_MuscleBelow30-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || below30 || xxx |
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| + | || wholeRange || <figure id="Mumi">[[Image:CanavanAlignment_MuscleMix-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || wholeRange || xxx |
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|rowspan="3"| T-COFFEE |
|rowspan="3"| T-COFFEE |
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| + | || above60 || <figure id="Tca6">[[Image:CanavanAlignment_TCoffeeAbove60-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || above60 || XXX |
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| − | || below30 || |
+ | || below30 || to be presented on request, since file size too large |
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| − | || wholeRange || |
+ | || wholeRange || to be presented on request, since file size too large |
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|rowspan="3"| EXPRESSO |
|rowspan="3"| EXPRESSO |
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| + | || above60 || <figure id="Exa6">[[Image:CanavanAlignment_ExpressoAbove60-alignment.png|centre|thumb|694px|''']]</figure> |
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| − | || above60 || XXX |
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| − | || below30 || |
+ | || below30 || to be presented on request, since file size too large |
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| − | || wholeRange || |
+ | || wholeRange || to be presented on request, since file size too large |
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Latest revision as of 13:15, 4 September 2013
Link back to Task 02: Alignments
Multiple Sequence Alignments
Visual representation of the multiple sequence alignments. Unfortunately it is not possible using Chimera to display the names of the sequences. Those can be extracted separately and will be presented on request. Since the Wiki is not able to handle files above 2MB, some alignments could not be uploaded. Those are also presented on request.
<figtable id="MSAPics">
| Comparison of Multiple Sequence Alignment Tools | ||
|---|---|---|
| Method | Used Set | Alignment |
| MAFFT | above60 | <figure id="Maa6"></figure> |
| below30 | <figure id="Mab3"></figure> | |
| wholeRange | to be presented on request, since file size too large | |
| MUSCLE | above60 | <figure id="Mua6"></figure> |
| below30 | <figure id="Mub3"></figure> | |
| wholeRange | <figure id="Mumi"></figure> | |
| T-COFFEE | above60 | <figure id="Tca6"></figure> |
| below30 | to be presented on request, since file size too large | |
| wholeRange | to be presented on request, since file size too large | |
| EXPRESSO | above60 | <figure id="Exa6"></figure> |
| below30 | to be presented on request, since file size too large | |
| wholeRange | to be presented on request, since file size too large | |
</figtable>
