Difference between revisions of "Task4 Hemochromatosis Protocol"
From Bioinformatikpedia
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| + | == Template search == |
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| − | HHPred: |
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| − | search by using |
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| + | Query sequence used: [http://www.uniprot.org/uniprot/Q30201.fasta Q30201] |
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| − | >sp|Q30201|HFE_HUMAN Hereditary hemochromatosis protein OS=Homo sapiens GN=HFE PE=1 SV=1 |
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| − | MGPRARPALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVF |
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| − | YDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQV |
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| − | ILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNR |
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| − | AYLERDCPAQLQQLLELGRGVLDQQVPPLVKVTHHVTSSVTTLRCRALNYYPQNITMKWL |
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| − | KDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIWEPS |
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| − | PSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE |
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| + | === HHPred === |
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| − | search on pdb70may15 |
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| + | We used HHPred ([http://toolkit.tuebingen.mpg.de/hhpred Webserver]) to search for homologs. Standard parameters were used (DB: pdb70_15May12). |
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| + | Weblink to results (as long as they are online): [http://toolkit.tuebingen.mpg.de/hhpred/results/1980863 results] |
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| + | === COMA === |
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| + | Another search was performed using COMA ([http://bioinformatics.ibt.lt:8085/coma/ Webserver]). Again standard parameters were kept (DB: pdb40_2012-03-22). |
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| + | Weblink to results (as long as they are online): [http://bioinformatics.ibt.lt:8085/coma/show/results/DABA40F9FD3019A1F8EEB5DAB88A784C59FBB794 results] |
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| − | COMA: |
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| − | standard parameters |
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Job Id |
Job Id |
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| + | == Model creation == |
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| + | |||
| + | == Evaluation == |
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| + | == Other == |
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| − | P01921 21.10%ident -->1iao |
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Revision as of 16:57, 29 May 2012
Template search
Query sequence used: Q30201
HHPred
We used HHPred (Webserver) to search for homologs. Standard parameters were used (DB: pdb70_15May12).
Weblink to results (as long as they are online): results
COMA
Another search was performed using COMA (Webserver). Again standard parameters were kept (DB: pdb40_2012-03-22).
Weblink to results (as long as they are online): results
