Difference between revisions of "Task2 Hemochromatosis Protocol"
From Bioinformatikpedia
Bernhoferm (talk | contribs) (Created page with "== Sequence Searches == === Blast === === PSI-Blast === === HHblits === == MSA ==") |
Bernhoferm (talk | contribs) (→Blast) |
||
| Line 2: | Line 2: | ||
=== Blast === |
=== Blast === |
||
| + | TSK="/mnt/home/student/bernhoferm/task2" |
||
| + | BIG="/mnt/project/pracstrucfunc12/data/big" |
||
| + | time blastall -p blastp -d $BIG/big_80 -i $TSK/Q30201.fasta -b 1250 -v 1250 -o $TSK/align/blast_default_1250.out |
||
| + | |||
| + | real 1m8.589s |
||
| + | user 1m6.810s |
||
| + | sys 0m1.110s |
||
=== PSI-Blast === |
=== PSI-Blast === |
||
Revision as of 21:58, 5 May 2012
Sequence Searches
Blast
TSK="/mnt/home/student/bernhoferm/task2" BIG="/mnt/project/pracstrucfunc12/data/big" time blastall -p blastp -d $BIG/big_80 -i $TSK/Q30201.fasta -b 1250 -v 1250 -o $TSK/align/blast_default_1250.out
real 1m8.589s user 1m6.810s sys 0m1.110s
