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=== Comparison === |
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=== Comparison === |
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==== Comparing the hits ==== |
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| [[File:venn_blast_hhblits.png|thumb| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]] |
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| [[File:venn_blast_hhblits.png|thumb| Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations]] |
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Venn diagrams created with [http://bioinfogp.cnb.csic.es/tools/venny/index.html Oliveros, J.C. (2007) VENNY. An interactive tool for comparing lists with Venn Diagrams.] |
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Venn diagrams created with [http://bioinfogp.cnb.csic.es/tools/venny/index.html Oliveros, J.C. (2007) VENNY. An interactive tool for comparing lists with Venn Diagrams.] |
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==== Comparing the Evalues ==== |
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[[File:Fabry_animation.gif]] |
Revision as of 07:06, 5 May 2012
Please see Task 2 for our scripts and line of action on this topic.
Sequence searches
Blast
 GO terms of P06280 and each BLAST hit (with Evalue <= 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the BLAST hits for P06280 |
 Histogram of the positive amino acids of the pairwise alignments of the BLAST hits for P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the BLAST hits for P06280 |
 Histogram of the length of the BLAST hits for P06280 |
Number of hits with Evalue < 0.003: 663
Psi-Blast
HHblits
2 iterations - default
 GO terms of P06280 and each HHblits hit (with Evalue < 0.003) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the HHblits hits for P06280 |
Number of hits with Evalue < 0.003: 326
 Histogram of the similarity of the HHblits hits to P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the HHblits hits for P06280 |
8 iterations
 GO terms of P06280 and each HHblits hit (with Evalue < 0.003 and 8 iterations) compared. Percentage terms shared, in relation to number of GO terms of P06280 (AGAL_HUMAN) in the upper picture, in the secon picture in relation to number of each hit |
 Histogram of the logarithmic E-values of the HHblits search with 8 iterations for P06280 |
Number of hits with Evalue < 0.003: 729
 Histogram of the similarity of the BLAST hits (search with 8 iterations) to P06280 |
 Histogram of the identical amino acids of the pairwise alignments of the BLAST hits (search with 8 iterations) for P06280 |
Comparison
Comparing the hits
 Venn diagram of proteins found by BLAST, HHBlits and HHBlits with 8 iterations |
 Venn diagram of the proteins found by BLAST, Psi-BLAST (10 iterations and E-value cutoff 10e-10 ) and HHBlits with 8 iterations |
 Venn diagram of the first 100 proteins found by BLAST, HHBlits and HHBlits with 8 iterations |
 Venn diagram of the first 100 proteins found by BLAST, Psi-BLAST and HHBlits with 8 iterations |
Venn diagrams created with Oliveros, J.C. (2007) VENNY. An interactive tool for comparing lists with Venn Diagrams.
Comparing the Evalues
