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I noticed you set "<code>-v 700 -b 700</code>". Is that enough to catch all hits up to the e-value limits? -- read the [[Task_alignments#Sequence_searches]] carefully... ;-) -- [[User:Andrea|andrea]] 10:14, 3 May 2012 (UTC) I actually thought it would be enough, since the instruction says "no more relevant hits are found." But maybe I misunderstood. What does relevant hit mean? --[[User:Rackersederj|Rackersederj]] 14:03, 3 May 2012 (UTC) We have the same problem. From the sentence cited by Julia we assumed we should set this constraint in a way that the returned hits end at an evalue that we would consider a maximum for relevant hits. This seems a bit strange since it comes down to setting an evalue threshold but that is the only senseful interpretation that came to our mind. --[[User:reeb|reebj]] 16:15, 3 May 2012 (UTC)

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