View source for Multiple Sequence Alignment: Muscle - set 1

From Bioinformatikpedia

← Multiple Sequence Alignment: Muscle - set 1

You do not have permission to edit this page, for the following reason:

---

You can view and copy the source of this page.

The native protein is colored red in the Alignment. The violett marked sequnence regions show the short sequences, completely aligned in the contigous gap of a longer sequence. MUSCLE (3.8) multiple sequence alignment tr|B7Z6S9|B7Z6S9_HUMAN MSDRLFSNPGPAPTPQGCFSRGCGWSGCILPSESYCAGPQSPVPPRRLCRLRWDFVLPPV tr|F5H241|F5H241_HUMAN ------------------------------------------------------------ <span style="color:#a30909">P04062 ------------------------------------------------------------</span> pdb|pdb|3gxi_A ------------------------------------------------------------ pdb|pdb|2nt1_A ------------------------------------------------------------ tr|F6WDY8|F6WDY8_HORSE ------------------------------------------------------------ tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN ------------------------------------------------------------ tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN GAAVSLRRRDSGTPVVFSSSNDPEGMEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS tr|F5H241|F5H241_HUMAN -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS <span style="color:#a30909">P04062 -------------------------MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVS</span> pdb|pdb|3gxi_A ------------------------------------------------------------ pdb|pdb|2nt1_A ------------------------------------------------------------ tr|F6WDY8|F6WDY8_HORSE -------------------------MELSSPSREGCLKCPGRVGIMAASFMGLLLLQAVS tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN -------------------------MELSSPSREEYPMPRGRVGIMAASLMGLLLLHTVS tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI tr|F5H241|F5H241_HUMAN WA<span style="color:#9725c4">S---------------------------------------------------------</span> <span style="color:#a30909">P04062 WASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI</span> pdb|pdb|3gxi_A ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI pdb|pdb|2nt1_A ----ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPI tr|F6WDY8|F6WDY8_HORSE RASGARPCSPKSFGYSSVVCVCNATYCDSLDPLTLPAPGTFSRYESTRSGRRMELSLGAI tr|D1L2S0|D1L2S0_BALPH --<span style="color:#9725c4">---------------VVCVCNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGAI</span> sp|Q2KHZ8|GLCM_BOVIN WVSGARPCSPKSFGYSSVVCVCNGTYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI tr|A9UD35|A9UD35_DELDE --<span style="color:#9725c4">-------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI</span> tr|F5CB27|F5CB27_DELCA --<span style="color:#9725c4">-------------------CNATYCDSLDPLTLPDPGTFSRFESTRSGRRMELSLGTI</span> tr|B7Z6S9|B7Z6S9_HUMAN QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY tr|F5H241|F5H241_HUMAN <span style="color:#9725c4">--------------------------------------------------------G</span>IGY <span style="color:#a30909">P04062 QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY</span> pdb|pdb|3gxi_A QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY pdb|pdb|2nt1_A QANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGY tr|F6WDY8|F6WDY8_HORSE QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY tr|D1L2S0|D1L2S0_BALPH <span style="color:#9725c4">QANRTGTGLLLTLQPD-----------------------------------------</span>--- sp|Q2KHZ8|GLCM_BOVIN QANRTGTGLLLTLQPDQKFQKVKGFGGAMTDAAALNILALSPAARNLLLKSYFSEEGIEY tr|A9UD35|A9UD35_DELDE <span style="color:#9725c4">QANRTGTGLLLTLQPDQKFQKVKG---------------------------------</span>--- tr|F5CB27|F5CB27_DELCA <span style="color:#9725c4">QANRTGTGLLLTLQPD-----------------------------------------</span>--- tr|B7Z6S9|B7Z6S9_HUMAN NIIRVPMASCDFSIRTYTYADTPDDFQLHNFGLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|F5H241|F5H241_HUMAN NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA <span style="color:#a30909">P04062 NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA</span> pdb|pdb|3gxi_A NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA pdb|pdb|2nt1_A NIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLA tr|F6WDY8|F6WDY8_HORSE NIIRVPMASCDFSIRVYTYADTPDDFQLHNFSLPEEDVKLKIPLIHQALELSQRPISLFA tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN NIIRVPMASCDFSIRTYTYDDSPDDFQLLNFSLPEEDVKLKIPLIHQALELANRSVSLFA tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP tr|F5H241|F5H241_HUMAN SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP <span style="color:#a30909">P04062 SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP</span> pdb|pdb|3gxi_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP pdb|pdb|2nt1_A SPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEP tr|F6WDY8|F6WDY8_HORSE SPWTSPTWLKTNGAVNGKGSLKGQPGDRYHQTWAKYFVKFLDAYAEHKLQFWAVTTENEP tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN SPWTSPTWLKTNGAVNGKGTLKGQAGDLYHKTWARYFVKFLDAYAEHKLRFWAVTAENEP tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL tr|F5H241|F5H241_HUMAN SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL <span style="color:#a30909">P04062 SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL</span> pdb|pdb|3gxi_A SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL pdb|pdb|2nt1_A SAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVL tr|F6WDY8|F6WDY8_HORSE SAGLISGYPFQCLGFTPEHQRDFIARDLGPTLANSTHRNVRVLMLDDQRLLLPRWAQVVL tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN TAGLLTGYPFQCLGFTPEHQRDFIARDLGPILANSTHRDVRLLMLDDQRLLLPRWAQVVL tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|F5H241|F5H241_HUMAN TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS <span style="color:#a30909">P04062 TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS</span> pdb|pdb|3gxi_A TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS pdb|pdb|2nt1_A TDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|F6WDY8|F6WDY8_HORSE ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPDMMLFASEACVGSKFWEQSVRLGS tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN ADPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGS tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM tr|F5H241|F5H241_HUMAN WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM <span style="color:#a30909">P04062 WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM</span> pdb|pdb|3gxi_A WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM pdb|pdb|2nt1_A WDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPM tr|F6WDY8|F6WDY8_HORSE WDRGVQYSHSIITNLLYHVAGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN WDRGMRYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDIAKDTFYKQPM tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|F5H241|F5H241_HUMAN FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA <span style="color:#a30909">P04062 FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA</span> pdb|pdb|3gxi_A FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA pdb|pdb|2nt1_A FYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|F6WDY8|F6WDY8_HORSE FYHLGHFSKFIPEGSQRVGLDASEKTNLDTVALMHPDGSAVVVVLNRSSKDVPLTIKDPA tr|D1L2S0|D1L2S0_BALPH ------------------------------------------------------------ sp|Q2KHZ8|GLCM_BOVIN FYHLGHFSKFIPEGSQRVGLVASKKSDLDTVALLRPDGSAVAVVLNRSSKDVPLTIKDPA tr|A9UD35|A9UD35_DELDE ------------------------------------------------------------ tr|F5CB27|F5CB27_DELCA ------------------------------------------------------------ tr|B7Z6S9|B7Z6S9_HUMAN VGFLETISPGYSIHTYLWRRQ tr|F5H241|F5H241_HUMAN VGFLETISPGYSIHTYLWRRQ <span style="color:#a30909">P04062 VGFLETISPGYSIHTYLWRRQ</span> pdb|pdb|3gxi_A VGFLETISPGYSIHTYLWHRQ pdb|pdb|2nt1_A VGFLETISPGYSIHTYLWHRQ tr|F6WDY8|F6WDY8_HORSE VGFLETVSPGYSIHTYLWRRQ tr|D1L2S0|D1L2S0_BALPH --------------------- sp|Q2KHZ8|GLCM_BOVIN VGFMETVSPGYSIHTYLWRRQ tr|A9UD35|A9UD35_DELDE --------------------- tr|F5CB27|F5CB27_DELCA ---------------------

Return to Multiple Sequence Alignment: Muscle - set 1.