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• Werner Syndrome
  Root Mean Square Fluctuation (RMSF)
  98 KB (14,878 words) - 20:52, 31 August 2011
• Glucocerebrosidase sequence based prediction
  ...term 3) and zero true positives. In contrast, if one uses the paths to the root of the tree of both reference annotation and prediction, one gets three tru
  70 KB (8,351 words) - 17:52, 28 August 2011
• Homology-modelling HEXA
  ...d structure. Therefore, we calculated the RMSD and the TM score. The RMSD (root-mean square deviation) calculates the distance between two aligned residues ...cture. Therefore, we calculated the RMSD score and the TM score. The RMSD (root-mean square deviation) calculates the distance between two aligned residues
  68 KB (10,725 words) - 21:33, 31 August 2011
• Glucocerebrosidase homology modelling
  ::The Cα Root Mean Square deviation describes the distance between the backbone atoms of
  30 KB (4,423 words) - 19:54, 22 August 2011
• Homology Modelling GLA
  ...tp://en.wikipedia.org/wiki/Root_mean_square_deviation_%28bioinformatics%29 root mean square deviation] (RMSD) value between the model and the reference str
  31 KB (4,626 words) - 22:28, 26 June 2011
• Molecular Dynamics Analysis BCKDHA
  === Root mean square fluctuations === [[Protocol_BCKDHA_MD#Root mean square fluctuations | Protocol and background information]] <br>
  86 KB (14,016 words) - 20:03, 29 September 2011
• Task 10: Molecular Dynamics Analysis
  ==== ROOT MEAN SQUARE FLUCTUATIONS ==== In this part of the analysis we are going to have a look at the root mean square fluctuations. By analyzing this value for our structure we migh
  46 KB (7,104 words) - 14:42, 29 September 2011
• Molecular Dynamics Simulations Analysis of Glucocerebrosidase
  ==== Root mean square fluctuations ==== The RMSF, root mean square fluctuation<ref>http://en.wikipedia.org/wiki/Root_mean_square_f
  71 KB (10,948 words) - 02:18, 26 September 2011
• Molecular Dynamcis analysis
  ====Root mean square fluctuations==== To get the root mean square<ref>http://en.wikipedia.org/wiki/Root_mean_square_fluctuation</
  65 KB (9,884 words) - 17:55, 3 October 2011
• Molecular Dynamics Analysis GLA
  ===Root mean square fluctuations=== | [[Image:GLA_Wt_rmsf.png|thumb|400px|Figure 19: Root mean square fluctuations for wildtype protein.]]
  21 KB (3,165 words) - 01:38, 25 October 2011
• Protocol BCKDHA MD
  === Root mean square fluctuations ===
  7 KB (1,158 words) - 09:19, 26 September 2011
• Run MD HEXA
  In the next step, we analyzed the root mean square fluctuations for the complete protein and also for the C-alpha
  11 KB (1,740 words) - 19:02, 30 September 2011
• CD task2 protocol
  4 regulation of root meristem growth 4 regulation of root meristem growth
  10 KB (1,180 words) - 16:52, 31 August 2012
• Fabry:Homology based structure predictions
  ...was computed with the command line tool ''TMscore''. It provides the RMSD (Root-mean-square deviation ), TM-score (Template Modeling Score), GDT-TS (Global
  243 KB (27,651 words) - 22:18, 4 June 2012
• Molecular Dynamics Simulations Gaucher Disease Scripts
  ROOT=/home/hpc/pr58ni/di34fon/mp/tasks/task08 export PATH="$ROOT/ag:$PATH"
  2 KB (302 words) - 14:57, 28 June 2012
• Canavan Task 10 - Molecular Dynamics Simulations
  <caption align="center"><b><xr nolink id="rmsf"/></b> Root Mean Square Fluctuations for the MD simulation run calculated per residue w ...sidue.png|thumb|250px|<b><xr nolink id="wt_rmsf_plot"/></b><br>Per residue root-mean-square-fluctution plot for the wildtype protein. There is a rigid regi
  43 KB (6,660 words) - 17:18, 31 August 2012
• Normal mode analysis Gaucher Disease
  ...in motion and a normal mode). If two homologous proteins are uploaded, the root mean square distance (RMSD) between all residues as well as the number of r
  18 KB (2,626 words) - 22:02, 2 September 2012
• Task 10 - Molecular Dynamics Simulations
  ...d deviation you can calculate the standard error dividing it by the square root of the nr of points
  3 KB (523 words) - 12:48, 31 July 2012
• Molecular Dynamics Simulations Analysis (PKU)
  ==== Root Mean Square Fluctuations ==== ==== Root Mean Square Deviations ====
  68 KB (10,617 words) - 10:53, 30 August 2012
• Molecular Dynamics Simulations Analysis Gaucher Disease
  === Root Mean Square Deviation === The root mean square deviation (RMSD) between two protein structures is the mean squ
  35 KB (5,395 words) - 06:45, 13 August 2012

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