ProtFun2.2 output
From Bioinformatikpedia
ProtFun 2.2 predictions for sp_P06865_H
>sp_P06865_H
- Functional category Prob Odds
Amino_acid_biosynthesis 0.161 7.331 Biosynthesis_of_cofactors 0.332 4.609 Cell_envelope => 0.804 13.186 Cellular_processes 0.110 1.506 Central_intermediary_metabolism 0.432 6.856 Energy_metabolism 0.113 1.259 Fatty_acid_metabolism 0.019 1.427 Purines_and_pyrimidines 0.519 2.136 Regulatory_functions 0.018 0.111 Replication_and_transcription 0.073 0.271 Translation 0.040 0.904 Transport_and_binding 0.685 1.670
- Enzyme/nonenzyme Prob Odds
Enzyme => 0.792 2.764 Nonenzyme 0.208 0.292
- Enzyme class Prob Odds
Oxidoreductase (EC 1.-.-.-) 0.143 0.685 Transferase (EC 2.-.-.-) 0.201 0.582 Hydrolase (EC 3.-.-.-) 0.329 1.039 Lyase (EC 4.-.-.-) 0.054 1.143 Isomerase (EC 5.-.-.-) 0.027 0.856 Ligase (EC 6.-.-.-) => 0.085 1.661
- Gene Ontology category Prob Odds
Signal_transducer 0.083 0.389 Receptor 0.105 0.617 Hormone 0.001 0.206 Structural_protein 0.010 0.357 Transporter 0.024 0.222 Ion_channel 0.018 0.310 Voltage-gated_ion_channel 0.002 0.082 Cation_channel 0.010 0.218 Transcription 0.058 0.453 Transcription_regulation 0.026 0.205 Stress_response 0.044 0.500 Immune_response 0.014 0.167 Growth_factor 0.005 0.372 Metal_ion_transport 0.009 0.020
The individual features used by ProtFun 2.2 rendered the following output:
Feature Output summary Full output SignalP 3.0 Most likely cleavage site between pos. 22 and 23: ATA-LW details ProP 1.0 No propeptide cleavage sites predicted details TargetP 1.1 No high confidence targeting predition details NetPhos 2.0 22 putative phosphorylation sites at positions 59 112 149 185 279 284 486 501 84 119 259 275 445 529 37 213 227 298 316 355 435 463 details NetOGlyc 3.1 1 putative O-glycosylated site at position 275 details NetNGlyc 1.0 4 putative N-glycosylated sites at positions 115 157 291 295 details TMHMM 2.0 No TM helices predicted details
NOTE 1: The individual features shown above are not all used in all the ProtFun predictions as their discriminatory power may be low for some categories. However, they are all included here for convenience. NOTE 2: The individual feature output shown below was generated with the settings needed by ProtFun. If you prefer other settings e.g. including graphics please click on the name of the specific feature in the table above and resubmit your sequence customizing the run to taste. The possible settings and the output format of each server are explained in detail on its main page.
