Mutation Minimization Plots (PKU)

From Bioinformatikpedia

Additional, quite uninteresting plots of the minimization of our mutations:

<figtable id="fig:ARG158GLN_energies"> Course of the energies during minimization of ARG158GLN with gromacs.

Energie of the angles in ARG158GLN in the AMBER03 forcefield.
Energie of the bonds in ARG158GLN in the AMBER03 forcefield.
Potential energy in ARG158GLN in the AMBER03 forcefield.
Energie of the bonds in ARG158GLN in the CHARMM27 forcefield.
Potential energy in ARG158GLN in the CHARMM27 forcefield.
Energie of the angles in ARG158GLN in the OPLS-AA forcefield.
Energie of the bonds in ARG158GLN in the OPLS-AA forcefield.
Potential energy in ARG158GLN in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:GLN172HIS_energies"> Course of the energies during minimization of GLN172HIS with gromacs.

Energie of the angles in GLN172HIS in the AMBER03 forcefield.
Energie of the bonds in GLN172HIS in the AMBER03 forcefield.
Potential energy in GLN172HIS in the AMBER03 forcefield.
Energie of the bonds in GLN172HIS in the CHARMM27 forcefield.
Potential energy in GLN172HIS in the CHARMM27 forcefield.
Energie of the angles in GLN172HIS in the OPLS-AA forcefield.
Energie of the bonds in GLN172HIS in the OPLS-AA forcefield.
Potential energy in GLN172HIS in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:ARG243GLN_energies"> Course of the energies during minimization of ARG243GLN with gromacs.

Energie of the angles in ARG243GLN in the AMBER03 forcefield.
Energie of the bonds in ARG243GLN in the AMBER03 forcefield.
Potential energy in ARG243GLN in the AMBER03 forcefield.
Energie of the bonds in ARG243GLN in the CHARMM27 forcefield.
Potential energy in ARG243GLN in the CHARMM27 forcefield.
Energie of the angles in ARG243GLN in the OPLS-AA forcefield.
Energie of the bonds in ARG243GLN in the OPLS-AA forcefield.
Potential energy in ARG243GLN in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:LEU255SER_energies"> Course of the energies during minimization of LEU255SER with gromacs.

Energie of the angles in LEU255SER in the AMBER03 forcefield.
Energie of the bonds in LEU255SER in the AMBER03 forcefield.
Potential energy in LEU255SER in the AMBER03 forcefield.
Energie of the bonds in LEU255SER in the CHARMM27 forcefield.
Potential energy in LEU255SER in the CHARMM27 forcefield.
Energie of the angles in LEU255SER in the OPLS-AA forcefield.
Energie of the bonds in LEU255SER in the OPLS-AA forcefield.
Potential energy in LEU255SER in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:MET276VAL_energies"> Course of the energies during minimization of MET276VAL with gromacs.

Energie of the angles in MET276VAL in the AMBER03 forcefield.
Energie of the bonds in MET276VAL in the AMBER03 forcefield.
Potential energy in MET276VAL in the AMBER03 forcefield.
Energie of the bonds in MET276VAL in the CHARMM27 forcefield.
Potential energy in MET276VAL in the CHARMM27 forcefield.
Energie of the angles in MET276VAL in the OPLS-AA forcefield.
Energie of the bonds in MET276VAL in the OPLS-AA forcefield.
Potential energy in MET276VAL in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:ARG297CYS_energies"> Course of the energies during minimization of ARG297CYS with gromacs.

Energie of the angles in ARG297CYS in the AMBER03 forcefield.
Energie of the bonds in ARG297CYS in the AMBER03 forcefield.
Potential energy in ARG297CYS in the AMBER03 forcefield.
Energie of the bonds in ARG297CYS in the CHARMM27 forcefield.
Potential energy in ARG297CYS in the CHARMM27 forcefield.
Energie of the angles in ARG297CYS in the OPLS-AA forcefield.
Energie of the bonds in ARG297CYS in the OPLS-AA forcefield.
Potential energy in ARG297CYS in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:ALA322GLY_energies"> Course of the energies during minimization of ALA322GLY with gromacs.

Energie of the angles in ALA322GLY in the AMBER03 forcefield.
Energie of the bonds in ALA322GLY in the AMBER03 forcefield.
Potential energy in ALA322GLY in the AMBER03 forcefield.
Energie of the bonds in ALA322GLY in the CHARMM27 forcefield.
Potential energy in ALA322GLY in the CHARMM27 forcefield.
Energie of the angles in ALA322GLY in the OPLS-AA forcefield.
Energie of the bonds in ALA322GLY in the OPLS-AA forcefield.
Potential energy in ALA322GLY in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:GLU330ASP_energies"> Course of the energies during minimization of GLU330ASP with gromacs.

Energie of the angles in GLU330ASP in the AMBER03 forcefield.
Energie of the bonds in GLU330ASP in the AMBER03 forcefield.
Potential energy in GLU330ASP in the AMBER03 forcefield.
Energie of the bonds in GLU330ASP in the CHARMM27 forcefield.
Potential energy in GLU330ASP in the CHARMM27 forcefield.
Energie of the angles in GLU330ASP in the OPLS-AA forcefield.
Energie of the bonds in GLU330ASP in the OPLS-AA forcefield.
Potential energy in GLU330ASP in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:GLY337VAL_energies"> Course of the energies during minimization of GLY337VAL with gromacs.

Energie of the angles in GLY337VAL in the AMBER03 forcefield.
Energie of the bonds in GLY337VAL in the AMBER03 forcefield.
Potential energy in GLY337VAL in the AMBER03 forcefield.
Energie of the bonds in GLY337VAL in the CHARMM27 forcefield.
Potential energy in GLY337VAL in the CHARMM27 forcefield.
Energie of the angles in GLY337VAL in the OPLS-AA forcefield.
Energie of the bonds in GLY337VAL in the OPLS-AA forcefield.
Potential energy in GLY337VAL in the OPLS-AA forcefield.

</figtable>

<figtable id="fig:ARG408TRP_energies"> Course of the energies during minimization of ARG408TRP with gromacs.

Energie of the angles in ARG408TRP in the AMBER03 forcefield.
Energie of the bonds in ARG408TRP in the AMBER03 forcefield.
Potential energy in ARG408TRP in the AMBER03 forcefield.
Energie of the bonds in ARG408TRP in the CHARMM27 forcefield.
Potential energy in ARG408TRP in the CHARMM27 forcefield.
Energie of the angles in ARG408TRP in the OPLS-AA forcefield.
Energie of the bonds in ARG408TRP in the OPLS-AA forcefield.
Potential energy in ARG408TRP in the OPLS-AA forcefield.

</figtable>