Here you can see the runfile we used to run the FoldX method.
<TITLE>FOLDX_runscript; <JOBSTART>#; <PDBS>#; <BATCH>list.txt; <COMMANDS>FOLDX_commandfile; <BuildModel>#,individual_list.txt; <END>#; <OPTIONS>FOLDX_optionfile; <Temperature>100; <R>#; <pH>5.5; <IonStrength>0.050; <water>-CRYSTAL; <metal>-CRYSTAL; <VdWDesign>2; <OutPDB>true; <pdb_hydrogens>false; <complex_with_DNA> true; <END>#; <JOBEND>#; <ENDFILE>#;
The individual_list.txt file is a file, in which we defined the path to the different models which should be used for the simulation. It is possible to write more than one model. Each model has to be in their own line.
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