Difference between revisions of "Task 8 (MSUD)"

From Bioinformatikpedia
(Created page with "== Results == Lab journal === SIFT === === Polyphen2 === === MutationTaster === === SNAP === === Summary === == Discussion ==")
 
(SIFT)
Line 4: Line 4:
   
 
=== SIFT ===
 
=== SIFT ===
  +
  +
The following table shows the prediction of mutation effects by SIFT. 6 out of 10 mutations are predicted to affect protein function.
  +
  +
  +
{| class='wikitable' border='1' style='width:700px'
  +
! mutation !! prediction !! score !! median sequence conservation !! sequences represented at position
  +
|-
  +
| P38H || tolerated || 0.16 || 3.16 || 17
  +
|-
  +
| M82L || tolerated || 0.56 || 3.03 || 43
  +
|-
  +
| T151M || tolerated || 0.05 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| A222T || affect protein function || 0.04 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| C264W || affect protein function || 0.00 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| R265W || affect protein function || 0.00 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| R314Q || affect protein function || 0.01 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| R346H || affect protein function || 0.00 || 3.03 || 46
  +
|-
  +
| I361V || tolerated || 0.12 || 3.03 || 46
  +
|- style="background-color: #FFBBBB;"
  +
| Y413H || affect protein function || 0.00 || 3.03 || 46
  +
|}
   
 
=== Polyphen2 ===
 
=== Polyphen2 ===

Revision as of 14:44, 27 June 2013

Results

Lab journal

SIFT

The following table shows the prediction of mutation effects by SIFT. 6 out of 10 mutations are predicted to affect protein function.


mutation prediction score median sequence conservation sequences represented at position
P38H tolerated 0.16 3.16 17
M82L tolerated 0.56 3.03 43
T151M tolerated 0.05 3.03 46
A222T affect protein function 0.04 3.03 46
C264W affect protein function 0.00 3.03 46
R265W affect protein function 0.00 3.03 46
R314Q affect protein function 0.01 3.03 46
R346H affect protein function 0.00 3.03 46
I361V tolerated 0.12 3.03 46
Y413H affect protein function 0.00 3.03 46

Polyphen2

MutationTaster

SNAP

Summary

Discussion