Difference between revisions of "Task 2 (MSUD)"

From Bioinformatikpedia
(BCKDHB)
(DLD)
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===== Low sequence identity =====
 
===== Low sequence identity =====
  +
  +
Mafft:
  +
[[Image:MSUD_DLD_low_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_DLD_low_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_DLD_low_seq_ident_tcoffee.png]]
   
 
===== High sequence identity =====
 
===== High sequence identity =====
  +
  +
Mafft:
  +
[[Image:MSUD_DLD_high_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_DLD_high_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_DLD_high_seq_ident_tcoffee.png]]
   
 
===== Whole range sequence identity =====
 
===== Whole range sequence identity =====
  +
  +
Mafft:
  +
[[Image:MSUD_DLD_whole_range_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_DLD_whole_range_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_DLD_whole_range_seq_ident_tcoffee.png]]
   
 
=== Discussion ===
 
=== Discussion ===

Revision as of 13:37, 4 May 2013

Sequence searches

lab journal

Results

Discussion

Multiple sequence alignments

lab journal

Results

The datsets can be found in /mnt/home/student/schillerl/MasterPractical/task2/datasets/.

The MSAs are located at /mnt/home/student/schillerl/MasterPractical/task2/MSAs/.

In the following sections the MSAs, visualised with Jalview, are shown.

BCKDHA

Low sequence identity

Mafft: MSUD BCKDHA low seq ident mafft.png

Muscle: MSUD BCKDHA low seq ident muscle.png

T-Coffee: MSUD BCKDHA low seq ident tcoffee.png

High sequence identity

Mafft: MSUD BCKDHA high seq ident mafft.png

Muscle: MSUD BCKDHA high seq ident muscle.png

T-Coffee: MSUD BCKDHA high seq ident tcoffee.png

Whole range sequence identity

Mafft: MSUD BCKDHA whole range seq ident mafft.png

Muscle: MSUD BCKDHA whole range seq ident muscle.png

T-Coffee: MSUD BCKDHA whole range seq ident tcoffee.png

BCKDHB

Low sequence identity

Mafft: MSUD BCKDHB low seq ident mafft.png

Muscle: MSUD BCKDHB low seq ident muscle.png

T-Coffee: MSUD BCKDHB low seq ident tcoffee.png

High sequence identity

Mafft: MSUD BCKDHB high seq ident mafft.png

Muscle: MSUD BCKDHB high seq ident muscle.png

T-Coffee: MSUD BCKDHB high seq ident tcoffee.png

Whole range sequence identity

Mafft: MSUD BCKDHB whole range seq ident mafft.png

Muscle: MSUD BCKDHB whole range seq ident muscle.png

T-Coffee: MSUD BCKDHB whole range seq ident tcoffee.png

DBT

Low sequence identity
High sequence identity
Whole range sequence identity

DLD

Low sequence identity

Mafft: MSUD DLD low seq ident mafft.png

Muscle: MSUD DLD low seq ident muscle.png

T-Coffee: MSUD DLD low seq ident tcoffee.png

High sequence identity

Mafft: MSUD DLD high seq ident mafft.png

Muscle: MSUD DLD high seq ident muscle.png

T-Coffee: MSUD DLD high seq ident tcoffee.png

Whole range sequence identity

Mafft: MSUD DLD whole range seq ident mafft.png

Muscle: MSUD DLD whole range seq ident muscle.png

T-Coffee: MSUD DLD whole range seq ident tcoffee.png

Discussion