Difference between revisions of "Task 2 (MSUD)"

From Bioinformatikpedia
(High sequence identity)
(BCKDHA)
Line 20: Line 20:
   
 
===== Low sequence identity =====
 
===== Low sequence identity =====
  +
  +
Mafft:
  +
[[Image:MSUD_BCKDHA_low_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_BCKDHA_low_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_BCKDHA_low_seq_ident_tcoffee.png]]
   
 
===== High sequence identity =====
 
===== High sequence identity =====
Line 25: Line 34:
 
Mafft:
 
Mafft:
 
[[Image:MSUD_BCKDHA_high_seq_ident_mafft.png]]
 
[[Image:MSUD_BCKDHA_high_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_BCKDHA_high_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_BCKDHA_high_seq_ident_tcoffee.png]]
   
 
===== Whole range sequence identity =====
 
===== Whole range sequence identity =====
  +
  +
Mafft:
  +
[[Image:MSUD_BCKDHA_whole_range_seq_ident_mafft.png]]
  +
  +
Muscle:
  +
[[Image:MSUD_BCKDHA_whole_range_seq_ident_muscle.png]]
  +
  +
T-Coffee:
  +
[[Image:MSUD_BCKDHA_whole_range_seq_ident_tcoffee.png]]
   
 
==== BCKDHB ====
 
==== BCKDHB ====

Revision as of 13:31, 4 May 2013

Sequence searches

lab journal

Results

Discussion

Multiple sequence alignments

lab journal

Results

The datsets can be found in /mnt/home/student/schillerl/MasterPractical/task2/datasets/.

The MSAs are located at /mnt/home/student/schillerl/MasterPractical/task2/MSAs/.

BCKDHA

Low sequence identity

Mafft: MSUD BCKDHA low seq ident mafft.png

Muscle: MSUD BCKDHA low seq ident muscle.png

T-Coffee: MSUD BCKDHA low seq ident tcoffee.png

High sequence identity

Mafft: MSUD BCKDHA high seq ident mafft.png

Muscle: MSUD BCKDHA high seq ident muscle.png

T-Coffee: MSUD BCKDHA high seq ident tcoffee.png

Whole range sequence identity

Mafft: MSUD BCKDHA whole range seq ident mafft.png

Muscle: MSUD BCKDHA whole range seq ident muscle.png

T-Coffee: MSUD BCKDHA whole range seq ident tcoffee.png

BCKDHB

Low sequence identity
High sequence identity
Whole range sequence identity

DBT

Low sequence identity
High sequence identity
Whole range sequence identity

DLD

Low sequence identity
High sequence identity
Whole range sequence identity

Discussion