Task 10 (MSUD)

From Bioinformatikpedia
Revision as of 16:56, 24 July 2013 by Schillerl (talk | contribs) (WEBnm@)


Lab journal


The informations that are provided on the results page include:

  • deformation energies and eigenvalues for the lowest-frequency non-trivial modes
  • atomic displacement and fluctuation plots
  • mode visualization with Jmol and vector field represention of modes
  • correlation matrix for motions between Calphas
  • overlap analysis for different conformations of the same protein

For the calculation of normal modes, WEBnm@ takes only Calpha atoms. The mass of the whole residue is assigned to its Calpha atom for the analysis.

The server gives eigenvalues for modes 7-56, deformation energies for modes 7-20 and atomic displacement and visualization for modes 7-12.