Difference between revisions of "Talk:Task 6 - Protein structure prediction from evolutionary sequence variation"

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From my results i would guess that it is below 10 in most cases.
 
From my results i would guess that it is below 10 in most cases.
But since the freecontact paper is not released yet, I don't know how it i calculated.
+
But since the freecontact paper is not released yet, I don't know how it is calculated.
   
 
Best,
 
Best,

Latest revision as of 22:10, 1 September 2013

Hi all, my problem is that for both pfam domains [1] [2] of our protein HFE_HUMAN, EVcouplings and EVfold stop at the mapping step without providing further details about the problem.

EVcouplings input for the MHC domain was:

SHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESRRVEPRTPWVSSRIsSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARqNRAYLERDCPAQLQQLLELGRG
known structure: 1A6Z

Also, I don't get emails about the job statuses anymore, when i start a job. For Ras on the other hand, everything worked fine.

Another question

What value can the CN score maximally assume?

From my results i would guess that it is below 10 in most cases. But since the freecontact paper is not released yet, I don't know how it is calculated.

Best, Alex