Talk:Structure-based mutation analysis (PKU)

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Revision as of 08:20, 26 June 2012 by Reeb (talk | contribs) (suggestions)

This is just a place to add criticism and or positive feedback so we Jonathan and Sebastian have a possibility to improve. Please note, that we wont be able to adress all matters immediately but we will address them eventually!

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source: [1]

criticism

positive feedback

Again, everything very nice !--Meiera 23:51, 25 June 2012 (UTC)

suggestions

  • What exactly do you want to convey by "...left for the reader as exercise"?
  • The SCWRL and FoldX energies (-> tables) could use some elaboration but you already know this.
  • Very wild color :)..... a overall color-scheme could make the entry more straightforward

das wars von mir, gute nacht --ali

  • 'the color is chosen automatically by PyMol' maybe not the best idea. At least having the reference in one colour and the mutant in another would be good for consistency -jonas

urgent matters

Just noticed that you used charmm27. When you use this force field the output from g energy misses angles. Also the number of the potential attribute is shifted 1 is Bond, 2 is "U-B" and 12 is "dont know right now". The potential is number 13. Im not sure what exactly U-B is but i think angle would be given when choosing the attributes Joerdensv

  • Ahead of you: Fixed the potential energy, still trying to figure out the "angle" option. Thx anyway! Boidolj 14:14, 24 June 2012 (UTC)